Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g015550.1.1 | Tomato | mitochondrion | 74.75 | 67.58 |
| PGSC0003DMT400034611 | Potato | mitochondrion | 33.33 | 55.0 |
| PGSC0003DMT400079574 | Potato | cytosol | 37.37 | 54.81 |
| PGSC0003DMT400035119 | Potato | nucleus | 35.86 | 44.1 |
| PGSC0003DMT400035125 | Potato | cytosol | 41.41 | 43.39 |
| PGSC0003DMT400058414 | Potato | nucleus | 28.79 | 41.91 |
| PGSC0003DMT400035117 | Potato | nucleus | 37.88 | 41.9 |
| PGSC0003DMT400035193 | Potato | cytosol, extracellular, nucleus | 13.64 | 40.91 |
| PGSC0003DMT400082465 | Potato | nucleus | 26.77 | 40.15 |
| PGSC0003DMT400035028 | Potato | nucleus | 23.74 | 38.21 |
| PGSC0003DMT400004366 | Potato | nucleus | 26.77 | 37.86 |
| PGSC0003DMT400029608 | Potato | nucleus | 27.27 | 37.76 |
| CDY25952 | Canola | nucleus | 39.39 | 37.68 |
| CDY41063 | Canola | nucleus | 39.39 | 37.32 |
| PGSC0003DMT400035129 | Potato | nucleus | 41.41 | 36.61 |
| Bra017471.1-P | Field mustard | nucleus | 38.38 | 36.36 |
| VIT_00s0956g00020.t01 | Wine grape | nucleus | 38.38 | 36.02 |
| KRH51197 | Soybean | nucleus | 39.39 | 34.98 |
| KRH01950 | Soybean | nucleus | 39.39 | 34.51 |
| PGSC0003DMT400063671 | Potato | nucleus | 23.74 | 34.06 |
| GSMUA_Achr3P04310_001 | Banana | nucleus | 36.36 | 33.96 |
| Bra024924.1-P | Field mustard | nucleus | 39.39 | 33.77 |
| CDY17715 | Canola | nucleus | 39.39 | 33.77 |
| AT5G47670.3 | Thale cress | nucleus | 39.39 | 33.33 |
| PGSC0003DMT400035121 | Potato | nucleus | 25.76 | 33.12 |
| PGSC0003DMT400057066 | Potato | nucleus | 28.79 | 30.81 |
| PGSC0003DMT400037958 | Potato | nucleus | 27.27 | 30.34 |
| PGSC0003DMT400095009 | Potato | nucleus | 27.78 | 28.8 |
| PGSC0003DMT400043176 | Potato | nucleus | 28.79 | 28.79 |
| PGSC0003DMT400010977 | Potato | nucleus | 27.78 | 27.09 |
| PGSC0003DMT400057379 | Potato | nucleus | 22.22 | 25.43 |
| PGSC0003DMT400059368 | Potato | cytosol | 17.68 | 22.58 |
| PGSC0003DMT400010436 | Potato | cytosol, mitochondrion, nucleus | 17.17 | 21.52 |
| PGSC0003DMT400063256 | Potato | cytosol, nucleus, plastid | 16.67 | 20.75 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:102587613 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:IPR009072 | UniProt:M1D7W9 | PFAM:PF00808 | EnsemblPlantsGene:PGSC0003DMG400034306 | PGSC:PGSC0003DMG400034306 |
| EnsemblPlants:PGSC0003DMT400084724 | PRINTS:PR00615 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF20 | SUPFAM:SSF47113 | SignalP:SignalP-noTM |
| UniParc:UPI000295338D | RefSeq:XP_006352177.1 | : | : | : | : |
Description
Leafy cotyledon 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400034306]
Coordinates
chr5:+:14237287..14238685
Molecular Weight (calculated)
21811.1 Da
IEP (calculated)
4.478
GRAVY (calculated)
-0.243
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: METGLALAIL LHPANAALLE LFECPIQEQD PFMPIGNVVI IMRKILPPHA KISNESKVAI QECVSEFIGF VTGQANDNCQ REQRKTIMAE DVLSALNDFG
101: FDDYIKPLSL YLHRYREVNG GVGGSLKREP LLLNRPMVDP ASSCSIMPNH LPPNFDMNHP PPMGDGFMQE DASNGRTSQC TVSTVDNEVD SLANEGKE
101: FDDYIKPLSL YLHRYREVNG GVGGSLKREP LLLNRPMVDP ASSCSIMPNH LPPNFDMNHP PPMGDGFMQE DASNGRTSQC TVSTVDNEVD SLANEGKE
001: MERGGFHGYR KLSVNNTTPS PPGLAANFLM AEGSMRPPEF NQPNKTSNGG EEECTVREQD RFMPIANVIR IMRRILPAHA KISDDSKETI QECVSEYISF
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
Arabidopsis Description
NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.