Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400034611 | Potato | mitochondrion | 45.81 | 68.33 |
| PGSC0003DMT400035193 | Potato | cytosol, extracellular, nucleus | 22.91 | 62.12 |
| PGSC0003DMT400079574 | Potato | cytosol | 35.75 | 47.41 |
| Solyc05g005380.1.1 | Tomato | plastid | 92.18 | 46.22 |
| VIT_00s0956g00020.t01 | Wine grape | nucleus | 51.96 | 44.08 |
| CDY25952 | Canola | nucleus | 50.84 | 43.96 |
| PGSC0003DMT400004366 | Potato | nucleus | 34.08 | 43.57 |
| CDY41063 | Canola | nucleus | 50.84 | 43.54 |
| PGSC0003DMT400082465 | Potato | nucleus | 31.84 | 43.18 |
| PGSC0003DMT400058414 | Potato | nucleus | 32.4 | 42.65 |
| PGSC0003DMT400035125 | Potato | cytosol | 44.69 | 42.33 |
| Bra017471.1-P | Field mustard | nucleus | 48.6 | 41.63 |
| KRH51197 | Soybean | nucleus | 51.4 | 41.26 |
| KRH01950 | Soybean | nucleus | 50.84 | 40.27 |
| AT5G47670.3 | Thale cress | nucleus | 52.51 | 40.17 |
| GSMUA_Achr3P04310_001 | Banana | nucleus | 46.93 | 39.62 |
| Bra024924.1-P | Field mustard | nucleus | 50.84 | 39.39 |
| CDY17715 | Canola | nucleus | 50.84 | 39.39 |
| PGSC0003DMT400029608 | Potato | nucleus | 31.28 | 39.16 |
| PGSC0003DMT400084724 | Potato | endoplasmic reticulum, extracellular | 41.9 | 37.88 |
| PGSC0003DMT400063671 | Potato | nucleus | 29.05 | 37.68 |
| PGSC0003DMT400035119 | Potato | nucleus | 32.4 | 36.02 |
| PGSC0003DMT400035129 | Potato | nucleus | 44.69 | 35.71 |
| PGSC0003DMT400057066 | Potato | nucleus | 36.87 | 35.68 |
| PGSC0003DMT400010977 | Potato | nucleus | 38.55 | 33.99 |
| PGSC0003DMT400037958 | Potato | nucleus | 33.52 | 33.71 |
| PGSC0003DMT400035028 | Potato | nucleus | 21.23 | 30.89 |
| PGSC0003DMT400095009 | Potato | nucleus | 32.4 | 30.37 |
| PGSC0003DMT400043176 | Potato | nucleus | 32.96 | 29.8 |
| PGSC0003DMT400057379 | Potato | nucleus | 26.26 | 27.17 |
| PGSC0003DMT400059368 | Potato | cytosol | 21.23 | 24.52 |
| PGSC0003DMT400010436 | Potato | cytosol, mitochondrion, nucleus | 20.67 | 23.42 |
| PGSC0003DMT400035121 | Potato | nucleus | 20.11 | 23.38 |
| PGSC0003DMT400063256 | Potato | cytosol, nucleus, plastid | 19.55 | 22.01 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:107062333 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:IPR009072 | UniProt:M1B1U5 | PFAM:PF00808 | EnsemblPlantsGene:PGSC0003DMG400013502 | PGSC:PGSC0003DMG400013502 |
| EnsemblPlants:PGSC0003DMT400035117 | PRINTS:PR00615 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF20 | SUPFAM:SSF47113 | UniParc:UPI000296D74D |
| RefSeq:XP_015168350.1 | : | : | : | : | : |
Description
Leafy cotyledon 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400013502]
Coordinates
chr5:-:8570774..8571313
Molecular Weight (calculated)
20203.8 Da
IEP (calculated)
4.607
GRAVY (calculated)
-0.548
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MERSMGMPAH LNQAITECIT REQDRFMPIA NVVRIMRRIL PSHAKISDDS KQTIQECVSE FISFITLEAN DRCQSEQRKT ITPEDILWAM SKVGFDDYIE
101: PLTLYLHQYR EFDGGESESL RGEPLLLKHQ MAHHHGYFVS PPPMGNNDMQ GDASNGSTSQ CAVASVDSDV ESPVEEGKE
101: PLTLYLHQYR EFDGGESESL RGEPLLLKHQ MAHHHGYFVS PPPMGNNDMQ GDASNGSTSQ CAVASVDSDV ESPVEEGKE
001: MERGGFHGYR KLSVNNTTPS PPGLAANFLM AEGSMRPPEF NQPNKTSNGG EEECTVREQD RFMPIANVIR IMRRILPAHA KISDDSKETI QECVSEYISF
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
Arabidopsis Description
NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.