Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400008518 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G13570.1 | PGSC0003DMT400008518 | AT3G12480.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g027650.1.1 | Tomato | nucleus | 84.85 | 80.77 |
| PGSC0003DMT400004366 | Potato | nucleus | 39.39 | 55.71 |
| Bra013143.1-P | Field mustard | nucleus | 58.59 | 55.5 |
| CDX93117 | Canola | nucleus | 58.59 | 55.5 |
| CDX89608 | Canola | nucleus | 58.59 | 55.5 |
| CDY37212 | Canola | nucleus | 58.08 | 55.29 |
| Bra037211.1-P | Field mustard | nucleus | 58.08 | 55.29 |
| CDX81449 | Canola | nucleus | 57.58 | 54.81 |
| PGSC0003DMT400082465 | Potato | nucleus | 36.36 | 54.55 |
| KRH59594 | Soybean | nucleus | 56.57 | 54.11 |
| AT2G13570.1 | Thale cress | nucleus | 58.08 | 53.49 |
| PGSC0003DMT400058414 | Potato | nucleus | 36.36 | 52.94 |
| PGSC0003DMT400029608 | Potato | nucleus | 37.37 | 51.75 |
| KRH40945 | Soybean | nucleus | 57.07 | 51.13 |
| PGSC0003DMT400063671 | Potato | nucleus | 33.33 | 47.83 |
| PGSC0003DMT400037958 | Potato | nucleus | 40.91 | 45.51 |
| PGSC0003DMT400057066 | Potato | nucleus | 40.4 | 43.24 |
| PGSC0003DMT400095009 | Potato | nucleus | 41.41 | 42.93 |
| PGSC0003DMT400034611 | Potato | mitochondrion | 25.76 | 42.5 |
| PGSC0003DMT400010977 | Potato | nucleus | 43.43 | 42.36 |
| PGSC0003DMT400035193 | Potato | cytosol, extracellular, nucleus | 13.13 | 39.39 |
| PGSC0003DMT400035117 | Potato | nucleus | 29.8 | 32.96 |
| PGSC0003DMT400079574 | Potato | cytosol | 20.71 | 30.37 |
| PGSC0003DMT400084724 | Potato | endoplasmic reticulum, extracellular | 28.79 | 28.79 |
| PGSC0003DMT400035125 | Potato | cytosol | 26.26 | 27.51 |
| PGSC0003DMT400035119 | Potato | nucleus | 22.22 | 27.33 |
| PGSC0003DMT400057379 | Potato | nucleus | 22.22 | 25.43 |
| PGSC0003DMT400035129 | Potato | nucleus | 27.27 | 24.11 |
| PGSC0003DMT400010436 | Potato | cytosol, mitochondrion, nucleus | 16.16 | 20.25 |
| PGSC0003DMT400063256 | Potato | cytosol, nucleus, plastid | 16.16 | 20.13 |
| PGSC0003DMT400059368 | Potato | cytosol | 15.15 | 19.35 |
| PGSC0003DMT400035028 | Potato | nucleus | 10.61 | 17.07 |
| PGSC0003DMT400035121 | Potato | nucleus | 12.12 | 15.58 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:102598645 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:M1BE77 |
| PFAM:PF00808 | EnsemblPlantsGene:PGSC0003DMG400016753 | PGSC:PGSC0003DMG400016753 | EnsemblPlants:PGSC0003DMT400043176 | PRINTS:PR00615 | ScanProsite:PS00685 |
| PANTHER:PTHR11064 | PANTHER:PTHR11064:SF9 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0002964792 | RefSeq:XP_006355096.1 |
| SEG:seg | : | : | : | : | : |
Description
Ccaat-binding transcription factor subunit A [Source:PGSC_GENE;Acc:PGSC0003DMG400016753]
Coordinates
chr12:-:23597653..23598339
Molecular Weight (calculated)
22449.5 Da
IEP (calculated)
6.272
GRAVY (calculated)
-0.785
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDERRGNCP ESSTMPTSTT LSTMSIIPNN NNNNNKEQDR FLPIANVGRI MKKVIPGNGK ISKDAKETVQ ECVSEFISFV TGEASDKCQR EKRKTINGDD
101: IIWAITILGF EDYVLPLKQY LSKYRELEGE KLNVPKQNQP QQHDQKPTFS YNSVYSPTGL LPQTSFVPTD QPFPLPFSPN SIQSQLPKQE HVDSMGHW
101: IIWAITILGF EDYVLPLKQY LSKYRELEGE KLNVPKQNQP QQHDQKPTFS YNSVYSPTGL LPQTSFVPTD QPFPLPFSPN SIQSQLPKQE HVDSMGHW
001: MTEESPEEDH GSPGVAETNP GSPSSKTNNN NNNNKEQDRF LPIANVGRIM KKVLPGNGKI SKDAKETVQE CVSEFISFVT GEASDKCQRE KRKTINGDDI
101: IWAITTLGFE DYVAPLKVYL CKYRDTEGEK VNSPKQQQQR QQQQQIQQQN HHNYQFQEQD QNNNNMSCTS YISHHHPSPF LPVDHQPFPN IAFSPKSLQK
201: QFPQQHDNNI DSIHW
101: IWAITTLGFE DYVAPLKVYL CKYRDTEGEK VNSPKQQQQR QQQQQIQQQN HHNYQFQEQD QNNNNMSCTS YISHHHPSPF LPVDHQPFPN IAFSPKSLQK
201: QFPQQHDNNI DSIHW
Arabidopsis Description
NFYB7Uncharacterized protein At2g13570 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV44]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.