Factsheet for Bra037211.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra034756.1-P
Bra038724.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13570.1	Bra034756.1-P	AT3G12480.1	21798944
AT2G13570.1	Bra038724.1-P	AT3G12480.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37212	Canola	nucleus	99.52	99.52
CDX81449	Canola	nucleus	97.6	97.6
Bra013143.1-P	Field mustard	nucleus	91.35	90.91
AT2G13570.1	Thale cress	nucleus	86.06	83.26
PGSC0003DMT400043176	Potato	nucleus	55.29	58.08
Bra021147.1-P	Field mustard	nucleus	42.31	56.05
Solyc12g027650.1.1	Tomato	nucleus	53.37	53.37
Bra027199.1-P	Field mustard	nucleus	43.27	52.94
Bra005074.1-P	Field mustard	nucleus	36.06	52.82
Bra018585.1-P	Field mustard	nucleus	32.69	51.52
KRH59594	Soybean	nucleus	50.96	51.21
KRH40945	Soybean	nucleus	52.88	49.77
Bra017473.1-P	Field mustard	nucleus	42.31	47.83
Bra000462.1-P	Field mustard	nucleus	35.58	47.44
Bra006991.1-P	Field mustard	nucleus	40.38	47.19
Bra022147.1-P	Field mustard	nucleus	41.83	46.77
Bra001615.1-P	Field mustard	nucleus	42.31	46.56
Bra004428.1-P	Field mustard	nucleus	34.62	46.45
Bra023095.1-P	Field mustard	nucleus	40.87	42.5
Bra017209.1-P	Field mustard	nucleus	38.94	42.41
Bra012301.1-P	Field mustard	nucleus	31.73	33.0
Bra031356.1-P	Field mustard	nucleus	32.69	31.78
Bra017471.1-P	Field mustard	nucleus	31.73	31.58
Bra024924.1-P	Field mustard	nucleus	31.73	28.57
Bra016397.1-P	Field mustard	cytosol	24.04	26.04
Bra009328.1-P	Field mustard	cytosol, nucleus, plastid	16.35	20.48
Bra005976.1-P	Field mustard	cytosol, nucleus, plastid	14.9	20.26
Bra035959.1-P	Field mustard	cytosol, nucleus, plastid	16.35	20.24
Bra028668.1-P	Field mustard	nucleus	12.02	13.02

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EnsemblPlantsGene:Bra037211	EnsemblPlants:Bra037211.1	EnsemblPlants:Bra037211.1-P	InterPro:CBFA_NFYB_domain
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	UniProt:M4F800	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064
PANTHER:PTHR11064:SF9	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI0002541BC4	SEG:seg	:

Description

AT2G13570 (E=2e-073) NF-YB7 | NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7); transcription factor

Coordinates

chrA09:+:3913166..3913792

Molecular Weight (calculated)

23720.4 Da

IEP (calculated)

5.798

GRAVY (calculated)

-1.054

Length

208 amino acids

Sequence
(BLAST)

001: MTEESPEEDH ESPEGAETNL GSSSLKNNNI NNKEQDRFLP IANVGRIMKK VLPGNGKISK DAKETVQECV SEFISFVTGE ASDKCQREKR KTINGDDIIW
101: AITTLGFEDY VAPLKIYLGK YRETEGEKVN SPKQRHQQQQ PQHNHHFQFQ EQDHNNISCT SYISQHHPSP FLPADHQPFP NLPFSPKSLQ NQFPQQNDNT
201: DSMGQWSV

Best Arabidopsis Sequence Match ( AT2G13570.1 )
(BLAST)

001: MTEESPEEDH GSPGVAETNP GSPSSKTNNN NNNNKEQDRF LPIANVGRIM KKVLPGNGKI SKDAKETVQE CVSEFISFVT GEASDKCQRE KRKTINGDDI
101: IWAITTLGFE DYVAPLKVYL CKYRDTEGEK VNSPKQQQQR QQQQQIQQQN HHNYQFQEQD QNNNNMSCTS YISHHHPSPF LPVDHQPFPN IAFSPKSLQK
201: QFPQQHDNNI DSIHW

Arabidopsis Description

NFYB7Uncharacterized protein At2g13570 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.