Factsheet for Bra012301.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008669.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21970.1	Bra008669.1-P	AT5G15840.1	17138697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01304	Canola	nucleus	99.5	86.15
CDY00411	Canola	nucleus	98.0	85.22
Bra031356.1-P	Field mustard	nucleus	87.0	81.31
AT1G21970.1	Thale cress	nucleus	79.0	66.39
KRG89094	Soybean	cytosol	44.5	52.98
KRH66068	Soybean	nucleus	45.5	52.3
Bra017471.1-P	Field mustard	nucleus	47.5	45.45
Bra005074.1-P	Field mustard	nucleus	31.5	44.37
Bra021147.1-P	Field mustard	nucleus	34.5	43.95
Bra024924.1-P	Field mustard	nucleus	50.5	43.72
Bra027199.1-P	Field mustard	nucleus	35.0	41.18
Bra018585.1-P	Field mustard	nucleus	27.0	40.91
Bra022147.1-P	Field mustard	nucleus	37.5	40.32
HORVU6Hr1G072110.1	Barley	nucleus	48.5	40.08
TraesCS6A01G287300.1	Wheat	nucleus	49.0	39.84
TraesCS6B01G316600.1	Wheat	nucleus	49.0	39.84
TraesCS6D01G268000.1	Wheat	nucleus	49.0	39.84
Bra000462.1-P	Field mustard	nucleus	31.0	39.74
Zm00001d051697_P001	Maize	nucleus	52.0	39.39
Bra017473.1-P	Field mustard	nucleus	36.0	39.13
Bra016397.1-P	Field mustard	cytosol	37.5	39.06
Os02t0725700-01	Rice	nucleus	49.5	38.98
Bra006991.1-P	Field mustard	nucleus	33.5	37.64
Bra004428.1-P	Field mustard	nucleus	29.0	37.42
KXG30848	Sorghum	nucleus	51.5	37.32
Zm00001d017898_P001	Maize	nucleus	51.5	37.05
Bra001615.1-P	Field mustard	nucleus	35.0	37.04
Bra017209.1-P	Field mustard	nucleus	32.5	34.03
Bra023095.1-P	Field mustard	nucleus	33.5	33.5
Bra013143.1-P	Field mustard	nucleus	34.0	32.54
Bra037211.1-P	Field mustard	nucleus	33.0	31.73
Bra035959.1-P	Field mustard	cytosol, nucleus, plastid	18.0	21.43
Bra009328.1-P	Field mustard	cytosol, nucleus, plastid	17.0	20.48
Bra005976.1-P	Field mustard	cytosol, nucleus, plastid	15.0	19.61
Bra028668.1-P	Field mustard	nucleus	13.5	14.06

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EnsemblPlantsGene:Bra012301	EnsemblPlants:Bra012301.1	EnsemblPlants:Bra012301.1-P	InterPro:CBFA_NFYB_domain
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	UniProt:M4D741	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064
PANTHER:PTHR11064:SF79	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI00025414AA	SEG:seg	:

Description

AT1G21970 (E=2e-063) LEC1, EMB 212, EMB212, NF-YB9 | LEC1 (LEAFY COTYLEDON 1); transcription activator/ transcription factor

Coordinates

chrA07:+:8700996..8701598

Molecular Weight (calculated)

21939.9 Da

IEP (calculated)

5.725

GRAVY (calculated)

-0.628

Length

200 amino acids

Sequence
(BLAST)

001: MTGSIGACDD KNKTILPQQQ PSMPREQDQY MPIANVIRIM RKILPPHAKI SDDAKETIQE CVSEYISFVT GEANERCQRE QRKTITAEDI LWAMSKLGFD
101: DYVGPLNVFI SRYREFETDR GCSLRGESSF KPVYGGSGMG FHGPPPPGSY GYGMLDQSMV MGGGRYYHNG SGPDGSVGGG GGSSSSMNGM PVYDQYGQYK

Best Arabidopsis Sequence Match ( AT1G21970.1 )
(BLAST)

001: MERGAPFSHY QLPKSISELN LDQHSNNPTP MTSSVVVAGA GDKNNGIVVQ QQPPCVAREQ DQYMPIANVI RIMRKTLPSH AKISDDAKET IQECVSEYIS
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK

Arabidopsis Description

NFYB9Nuclear transcription factor Y subunit B-9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.