Factsheet for Bra008669.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000462.1-P
Bra004428.1-P
Bra005541.1-P
Bra012301.1-P
Bra013248.1-P
Bra024408.1-P
Bra031356.1-P
Bra031849.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15840.1	Bra012301.1-P	AT1G21970.1	17138697
AT5G15840.1	Bra031356.1-P	AT1G21970.1	17138697
AT5G15840.1	Bra005541.1-P	AT2G32950.1	18296627
AT5G15840.1	Bra005541.1-P	AT2G32950.1	18388858
AT5G15840.1	Bra000462.1-P	AT2G47810.1	17138697
AT5G15840.1	Bra004428.1-P	AT2G47810.1	17138697
AT5G15840.1	Bra013248.1-P	AT3G24650.1	10743655
AT5G15840.1	Bra024408.1-P	AT5G65683.1	21798944
AT5G15840.1	Bra031849.1-P	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69494	Canola	nucleus	98.63	98.1
AT5G15840.1	Thale cress	nucleus	74.32	72.92
Bra021464.1-P	Field mustard	nucleus	47.27	53.89
Bra023541.1-P	Field mustard	nucleus	45.36	52.7
Bra008668.1-P	Field mustard	nucleus	48.09	52.23
Bra001043.1-P	Field mustard	nucleus	31.15	50.0
VIT_14s0083g00640.t01	Wine grape	nucleus	53.28	49.87
KRG93763	Soybean	nucleus	48.09	48.09
Solyc02g089500.2.1	Tomato	nucleus	18.58	47.89
KRH18308	Soybean	nucleus	46.72	47.37
KRH45169	Soybean	nucleus	44.54	46.84
GSMUA_Achr4P18680_001	Banana	nucleus	11.2	46.59
KRH01455	Soybean	nucleus	44.26	46.02
PGSC0003DMT400026068	Potato	nucleus	48.36	43.7
PGSC0003DMT400026065	Potato	nucleus	48.91	43.34
Bra032061.1-P	Field mustard	nucleus	33.88	42.91
GSMUA_Achr3P28130_001	Banana	nucleus	30.05	39.29
Bra036528.1-P	Field mustard	nucleus	36.34	38.55
Bra009805.1-P	Field mustard	nucleus	36.89	38.46
Bra020425.1-P	Field mustard	nucleus, plastid	35.25	37.72
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	28.69	36.08
Bra002709.1-P	Field mustard	nucleus	20.77	34.86
Bra004423.1-P	Field mustard	nucleus	20.77	22.75
Bra001264.1-P	Field mustard	nucleus	21.58	22.51
Bra030070.1-P	Field mustard	nucleus	18.58	22.08
Bra040020.1-P	Field mustard	nucleus	21.86	21.86
Bra020709.1-P	Field mustard	nucleus	20.77	21.65
Bra029666.1-P	Field mustard	nucleus	22.4	21.24
Bra037499.1-P	Field mustard	nucleus	18.85	20.0
Bra023858.1-P	Field mustard	nucleus	20.49	19.43
Bra041077.1-P	Field mustard	nucleus	21.04	18.87
HORVU0Hr1G022380.1	Barley	cytosol	14.21	18.31
Bra010908.1-P	Field mustard	nucleus	19.67	17.22

Protein Annotations

MapMan:15.5.1.2	EnsemblPlantsGene:Bra008669	EnsemblPlants:Bra008669.1	EnsemblPlants:Bra008669.1-P	InterPro:CCT_domain	GO:GO:0000003
GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628
GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0010018	GO:GO:0010218
InterPro:IPR000315	InterPro:IPR010402	UniProt:M4CWS2	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF39	SMART:SM00336	UniParc:UPI00000AADA6	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

AT5G15840 (E=2e-119) CO, FG | CO (CONSTANS); transcription factor/ transcription regulator/ zinc ion binding

Coordinates

chrA10:+:13312895..13314176

Molecular Weight (calculated)

41574.3 Da

IEP (calculated)

7.337

GRAVY (calculated)

-0.900

Length

366 amino acids

Sequence
(BLAST)

001: MFKQESNNIG SEENNTGPRA CDTCGSTICT VYCHADSAYL CNSCDAQVHS ANRVASRHKR VRVCESCERA PAAFMCEADD VSLCTACDLE VHSANPLARR
101: HQRVPVVPIT GNSCSSLATA NHTTVTEPEK RVVLVQEDAK ETASWLFPKN SDNHNNNNQN NELLFSDDYL DLADYNSSMD YKFTGQYNQP TQHKQDCTVP
201: EKNYGGDRVV PLQLEETRGN LHHKQHNITY GSSGSHYNNN GSINHNAYNP SMETDFVPEQ TAPDKTVSHP KTHKGKIEKL PEPLIQILSP MDREARVLRY
301: REKKKRRKFE KTIRYASRKA YAERRPRING RFAKISETEV EDQEYNTMLM YYDTGYGIVP SFYGQK

Best Arabidopsis Sequence Match ( AT5G15840.1 )
(BLAST)

001: MLKQESNDIG SGENNRARPC DTCRSNACTV YCHADSAYLC MSCDAQVHSA NRVASRHKRV RVCESCERAP AAFLCEADDA SLCTACDSEV HSANPLARRH
101: QRVPILPISG NSFSSMTTTH HQSEKTMTDP EKRLVVDQEE GEEGDKDAKE VASWLFPNSD KNNNNQNNGL LFSDEYLNLV DYNSSMDYKF TGEYSQHQQN
201: CSVPQTSYGG DRVVPLKLEE SRGHQCHNQQ NFQFNIKYGS SGTHYNDNGS INHNAYISSM ETGVVPESTA CVTTASHPRT PKGTVEQQPD PASQMITVTQ
301: LSPMDREARV LRYREKRKTR KFEKTIRYAS RKAYAEIRPR VNGRFAKREI EAEEQGFNTM LMYNTGYGIV PSF

Arabidopsis Description

COZinc finger protein CONSTANS [Source:UniProtKB/Swiss-Prot;Acc:Q39057]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.