CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80136
CDX83320
CDX93029
CDY00411
CDY01304
CDY08765
CDY12145
CDY15121
CDY30639
CDY37838
CDY45614
CDY52535
CDY52540
CDY53021
CDY68650

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15840.1	CDY00411	AT1G21970.1	17138697
AT5G15840.1	CDY01304	AT1G21970.1	17138697
AT5G15840.1	CDY30639	AT1G21970.1	17138697
AT5G15840.1	CDY68650	AT1G21970.1	17138697
AT5G15840.1	CDY12145	AT2G32950.1	18296627
AT5G15840.1	CDY52540	AT2G32950.1	18296627
AT5G15840.1	CDY12145	AT2G32950.1	18388858
AT5G15840.1	CDY52540	AT2G32950.1	18388858
AT5G15840.1	CDX80136	AT2G47810.1	17138697
AT5G15840.1	CDX83320	AT2G47810.1	17138697
AT5G15840.1	CDY53021	AT2G47810.1	17138697
AT5G15840.1	CDX93029	AT3G24650.1	10743655
AT5G15840.1	CDY15121	AT3G24650.1	10743655
AT5G15840.1	CDY08765	AT5G65683.1	21798944
AT5G15840.1	CDY37838	AT5G65683.1	21798944
AT5G15840.1	CDY45614	AT5G65683.1	21798944
AT5G15840.1	CDY52535	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008669.1-P	Field mustard	nucleus	98.1	98.63
CDY26469	Canola	nucleus	95.11	95.63
AT5G15840.1	Thale cress	nucleus	73.91	72.92
CDY69474	Canola	nucleus, plastid	14.4	55.21
CDY71884	Canola	nucleus	43.48	54.24
CDY71818	Canola	nucleus	43.21	53.72
CDX90969	Canola	nucleus	45.92	52.65
CDX69493	Canola	nucleus	48.1	52.52
CDX85529	Canola	nucleus	45.11	52.37
CDY26470	Canola	nucleus	46.2	51.05
CDX74261	Canola	nucleus	30.98	50.0
VIT_14s0083g00640.t01	Wine grape	nucleus	52.99	49.87
KRG93763	Soybean	nucleus	47.83	48.09
Solyc02g089500.2.1	Tomato	nucleus	18.48	47.89
KRH18308	Soybean	nucleus	46.47	47.37
KRH45169	Soybean	nucleus	44.29	46.84
KRH01455	Soybean	nucleus	44.02	46.02
CDX91989	Canola	nucleus	28.26	45.61
CDY02749	Canola	nucleus, plastid	31.52	44.79
PGSC0003DMT400026068	Potato	nucleus	48.1	43.7
CDY19821	Canola	nucleus	34.78	43.54
CDY36171	Canola	nucleus	34.24	43.45
PGSC0003DMT400026065	Potato	nucleus	48.64	43.34
CDX88145	Canola	nucleus	34.51	43.2
CDY45597	Canola	nucleus	33.7	42.91
CDX87105	Canola	nucleus, plastid	34.51	40.06
CDX80476	Canola	nucleus, plastid	34.51	38.6
CDY58843	Canola	nucleus, plastid	35.6	38.3
CDY25892	Canola	nucleus	33.7	37.24
CDY49730	Canola	nucleus	20.65	34.86
CDY15696	Canola	nucleus	18.21	23.18
CDY53026	Canola	nucleus	20.92	23.05
CDY07979	Canola	nucleus	22.01	23.01
CDX80141	Canola	nucleus	20.65	22.89
CDY35952	Canola	nucleus	22.28	22.22
CDY28029	Canola	nucleus	22.28	22.04
CDY05691	Canola	nucleus	20.65	21.9
CDY22125	Canola	nucleus	21.74	21.86
CDY48743	Canola	nucleus	20.65	21.71
CDX86318	Canola	nucleus	20.11	20.67
CDX85321	Canola	nucleus	20.11	20.61
CDX74034	Canola	nucleus	21.47	20.26
CDY66639	Canola	nucleus	21.47	19.6
CDY55657	Canola	nucleus	20.38	19.43
CDY64255	Canola	nucleus	19.57	19.41
CDY68819	Canola	nucleus	20.11	19.12
CDY30385	Canola	nucleus	20.11	19.12
HORVU0Hr1G022380.1	Barley	cytosol	14.13	18.31
CDY11755	Canola	nucleus	19.29	18.07
CDX90119	Canola	nucleus	19.29	16.95
CDY04213	Canola	nucleus	14.13	15.48
CDY48428	Canola	nucleus	8.7	11.85
CDY07393	Canola	nucleus	15.22	10.45

Protein Annotations

MapMan:15.5.1.2	GO:A0A078BZY1	ProteinID:AAC27696.1	InterPro:CCT_domain	EnsemblPlants:CDX69494	ProteinID:CDX69494
ProteinID:CDX69494.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00135488001	InterPro:IPR000315	InterPro:IPR010402
UniProt:O48885	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319
PANTHER:PTHR31319:SF39	SMART:SM00336	UniParc:UPI00000AB21D	InterPro:Znf_B-box	SEG:seg	:

Description

BnaA10g18430DBnaA10g18430D protein [Source:UniProtKB/TrEMBL;Acc:O48885]

Coordinates

chrLK031790:+:489977..491264

Molecular Weight (calculated)

41931.8 Da

IEP (calculated)

7.822

GRAVY (calculated)

-0.918

Length

368 amino acids

Sequence
(BLAST)

001: MFKQESNNNI CNRENNRGAR ACDTCGSTIC TVYCHADSAY LCNSCDAQVH SANRVASRHK RVRVCESCER APAAFMCEAD DVSLCTACDL EVHSANPLAR
101: RHQRVPVVPI TGNSCSSLAT ANHTTVTEPE KRVVLVQEDA KETASWLFPK NSDNHNNNNN QNNELLFSDD YLDLADYNSS MDYKFTGQYN QPTQHKQDCT
201: VPEKNYGGDR VVPLQLEETR GNLHHKQHNI TYGSSGSHYN NNGSINHNAY NPSMETDFVP EQTAPDKTVS HPKTHKGKIE KLPEPLIQIL SPMDREARVL
301: RYREKKKRRK FEKTIRYASR KAYAERRPRI NGRFAKISET EVEDQEYNTM LMYYDTGYGI VPSFYGQK

Best Arabidopsis Sequence Match ( AT5G15840.1 )
(BLAST)

001: MLKQESNDIG SGENNRARPC DTCRSNACTV YCHADSAYLC MSCDAQVHSA NRVASRHKRV RVCESCERAP AAFLCEADDA SLCTACDSEV HSANPLARRH
101: QRVPILPISG NSFSSMTTTH HQSEKTMTDP EKRLVVDQEE GEEGDKDAKE VASWLFPNSD KNNNNQNNGL LFSDEYLNLV DYNSSMDYKF TGEYSQHQQN
201: CSVPQTSYGG DRVVPLKLEE SRGHQCHNQQ NFQFNIKYGS SGTHYNDNGS INHNAYISSM ETGVVPESTA CVTTASHPRT PKGTVEQQPD PASQMITVTQ
301: LSPMDREARV LRYREKRKTR KFEKTIRYAS RKAYAEIRPR VNGRFAKREI EAEEQGFNTM LMYNTGYGIV PSF

Arabidopsis Description

COZinc finger protein CONSTANS [Source:UniProtKB/Swiss-Prot;Acc:Q39057]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.