Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19821 | Canola | nucleus | 89.12 | 89.12 |
| CDX80476 | Canola | nucleus, plastid | 97.96 | 87.54 |
| Bra009805.1-P | Field mustard | nucleus | 100.0 | 83.76 |
| CDX87105 | Canola | nucleus, plastid | 89.8 | 83.28 |
| AT5G24930.1 | Thale cress | nucleus | 92.86 | 75.41 |
| CDY36171 | Canola | nucleus | 57.48 | 58.28 |
| CDY45597 | Canola | nucleus | 56.46 | 57.44 |
| VIT_04s0008g07340.t01 | Wine grape | nucleus, plastid | 63.95 | 54.18 |
| CDY02749 | Canola | nucleus, plastid | 44.22 | 50.19 |
| Solyc12g096500.1.1 | Tomato | nucleus | 58.5 | 48.04 |
| PGSC0003DMT400075520 | Potato | nucleus | 56.8 | 46.78 |
| CDY69474 | Canola | nucleus, plastid | 14.97 | 45.83 |
| PGSC0003DMT400067657 | Potato | nucleus | 54.08 | 45.82 |
| Solyc08g006530.2.1 | Tomato | nucleus | 53.74 | 45.27 |
| CDY58843 | Canola | nucleus, plastid | 51.36 | 44.15 |
| CDY25892 | Canola | nucleus | 46.94 | 41.44 |
| CDY49730 | Canola | nucleus | 29.93 | 40.37 |
| CDY71884 | Canola | nucleus | 38.1 | 37.97 |
| CDX85529 | Canola | nucleus | 40.14 | 37.22 |
| CDY71818 | Canola | nucleus | 37.41 | 37.16 |
| CDY26470 | Canola | nucleus | 41.5 | 36.64 |
| CDX90969 | Canola | nucleus | 39.8 | 36.45 |
| CDX69493 | Canola | nucleus | 41.5 | 36.2 |
| CDY26469 | Canola | nucleus | 43.2 | 34.7 |
| CDX69494 | Canola | nucleus | 43.2 | 34.51 |
| CDX74261 | Canola | nucleus | 26.53 | 34.21 |
| TraesCS6D01G269500.1 | Wheat | nucleus | 41.16 | 32.79 |
| TraesCS6B01G319500.1 | Wheat | nucleus | 40.82 | 32.43 |
| TraesCS6A01G289400.1 | Wheat | nucleus | 40.48 | 32.25 |
| CDX91989 | Canola | nucleus | 24.15 | 31.14 |
| Os06t0275000-01 | Rice | mitochondrion | 41.16 | 30.63 |
| EER88227 | Sorghum | nucleus | 42.52 | 30.41 |
| Zm00001d045735_P002 | Maize | extracellular, vacuole | 44.22 | 30.37 |
| OQU85473 | Sorghum | nucleus | 37.07 | 29.78 |
| TraesCS7B01G118300.1 | Wheat | nucleus | 38.44 | 29.5 |
| TraesCS7D01G213000.2 | Wheat | nucleus | 38.1 | 29.24 |
| TraesCS7A01G211300.1 | Wheat | nucleus | 37.76 | 28.83 |
| CDY15696 | Canola | nucleus | 22.11 | 22.49 |
| CDY07979 | Canola | nucleus | 25.51 | 21.31 |
| CDY05691 | Canola | nucleus | 24.83 | 21.04 |
| CDY53026 | Canola | nucleus | 23.81 | 20.96 |
| CDY48743 | Canola | nucleus | 24.83 | 20.86 |
| CDX80141 | Canola | nucleus | 23.47 | 20.78 |
| CDY35952 | Canola | nucleus | 25.85 | 20.6 |
| CDY22125 | Canola | nucleus | 25.51 | 20.49 |
| CDY28029 | Canola | nucleus | 25.85 | 20.43 |
| CDY30385 | Canola | nucleus | 26.87 | 20.41 |
| CDY68819 | Canola | nucleus | 26.87 | 20.41 |
| CDY11755 | Canola | nucleus | 26.87 | 20.1 |
| CDX85321 | Canola | nucleus | 23.81 | 19.5 |
| CDY66639 | Canola | nucleus | 26.53 | 19.35 |
| CDX86318 | Canola | nucleus | 23.47 | 19.27 |
| CDX74034 | Canola | nucleus | 25.17 | 18.97 |
| CDX90119 | Canola | nucleus | 26.19 | 18.38 |
| CDY64255 | Canola | nucleus | 23.13 | 18.33 |
| CDY55657 | Canola | nucleus | 23.47 | 17.88 |
| CDY04213 | Canola | nucleus | 20.07 | 17.56 |
| CDY48428 | Canola | nucleus | 12.59 | 13.7 |
| CDY07393 | Canola | nucleus | 20.75 | 11.38 |
Protein Annotations
| MapMan:15.5.1.2 | GO:A0A078DG31 | InterPro:CCT_domain | EnsemblPlants:CDX88145 | ProteinID:CDX88145 | ProteinID:CDX88145.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00147590001 | InterPro:IPR000315 | InterPro:IPR010402 | PFAM:PF00643 | PFAM:PF06203 |
| PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF14 | SMART:SM00336 | UniParc:UPI0004EE5BB8 |
| InterPro:Znf_B-box | SEG:seg | : | : | : | : |
Description
BnaA06g27360D
Coordinates
chrLK031854:+:928066..929888
Molecular Weight (calculated)
31857.5 Da
IEP (calculated)
8.339
GRAVY (calculated)
-0.358
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSAAS
101: WLLPNPKTTT AVATAAEAVP GDSPEMNTGQ QYLFPDLDLD YGTNRTVKVA TVNENCYELD FTGGSKGFTY GYNSISHSQV SSSSLEVGVV PDGGSVADVS
201: YPYGGAATSV TDPGTQRAVP LTAAEREARV MRYREKRKNR KFEKTIRYAS RKAYAEMRPR IKGRFAKRTD TNDSNDVVVG HGGIFSGFGL VPTF
101: WLLPNPKTTT AVATAAEAVP GDSPEMNTGQ QYLFPDLDLD YGTNRTVKVA TVNENCYELD FTGGSKGFTY GYNSISHSQV SSSSLEVGVV PDGGSVADVS
201: YPYGGAATSV TDPGTQRAVP LTAAEREARV MRYREKRKNR KFEKTIRYAS RKAYAEMRPR IKGRFAKRTD TNDSNDVVVG HGGIFSGFGL VPTF
001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF
Arabidopsis Description
COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.