Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KXG31183 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24790.1 | KXG31183 | AT2G32950.1 | 16339850 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G269500.1 | Wheat | nucleus | 52.73 | 52.3 |
| TraesCS6B01G319500.1 | Wheat | nucleus | 52.46 | 51.89 |
| TraesCS6A01G289400.1 | Wheat | nucleus | 52.19 | 51.76 |
| EER88227 | Sorghum | nucleus | 50.82 | 45.26 |
| CDY19821 | Canola | nucleus | 30.33 | 37.76 |
| CDY36171 | Canola | nucleus | 29.78 | 37.59 |
| CDX88145 | Canola | nucleus | 29.78 | 37.07 |
| CDY02749 | Canola | nucleus, plastid | 26.23 | 37.07 |
| Bra032061.1-P | Field mustard | nucleus | 28.69 | 36.33 |
| CDY45597 | Canola | nucleus | 28.42 | 35.99 |
| AT2G24790.1 | Thale cress | nucleus, plastid | 28.42 | 35.37 |
| VIT_04s0008g07340.t01 | Wine grape | nucleus, plastid | 33.33 | 35.16 |
| CDX80476 | Canola | nucleus, plastid | 30.87 | 34.35 |
| CDX87105 | Canola | nucleus, plastid | 29.23 | 33.75 |
| EES12446 | Sorghum | nucleus | 30.05 | 33.43 |
| Bra009805.1-P | Field mustard | nucleus | 31.69 | 33.05 |
| Bra036528.1-P | Field mustard | nucleus | 31.15 | 33.04 |
| VIT_11s0052g01800.t01 | Wine grape | nucleus, plastid | 32.51 | 32.96 |
| AT5G24930.1 | Thale cress | nucleus | 32.24 | 32.6 |
| Bra020425.1-P | Field mustard | nucleus, plastid | 30.05 | 32.16 |
| CDY58843 | Canola | nucleus, plastid | 30.05 | 32.16 |
| KRH18980 | Soybean | nucleus | 31.69 | 31.78 |
| Bra002709.1-P | Field mustard | nucleus | 18.85 | 31.65 |
| CDY49730 | Canola | nucleus | 18.85 | 31.65 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 30.33 | 31.27 |
| KRH02915 | Soybean | nucleus | 31.42 | 30.75 |
| EES05406 | Sorghum | nucleus | 28.14 | 30.65 |
| PGSC0003DMT400070680 | Potato | nucleus | 32.24 | 30.65 |
| CDY25892 | Canola | nucleus | 27.87 | 30.63 |
| Solyc07g006630.2.1 | Tomato | nucleus | 31.69 | 30.05 |
| EER90145 | Sorghum | nucleus | 27.87 | 27.13 |
| OQU84486 | Sorghum | nucleus | 28.14 | 26.41 |
| EES14798 | Sorghum | nucleus | 19.4 | 24.32 |
| KXG19836 | Sorghum | nucleus | 21.31 | 18.98 |
| EES07342 | Sorghum | nucleus | 20.22 | 18.23 |
| EER99873 | Sorghum | nucleus | 18.03 | 15.98 |
| EES14176 | Sorghum | nucleus | 19.95 | 14.9 |
| EER94860 | Sorghum | nucleus | 16.39 | 14.53 |
Protein Annotations
| MapMan:35.1 | UniProt:A0A1Z5RNZ1 | InterPro:CCT_domain | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | GO:GO:0046872 |
| InterPro:IPR000315 | InterPro:IPR010402 | EnsemblPlants:OQU85473 | ProteinID:OQU85473 | ProteinID:OQU85473.1 | PFAM:PF06203 |
| PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF38 | SMART:SM00336 | EnsemblPlantsGene:SORBI_3004G252300 |
| UniParc:UPI000B8B9B28 | InterPro:Znf_B-box | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:59832888..59835086
Molecular Weight (calculated)
40897.2 Da
IEP (calculated)
8.238
GRAVY (calculated)
-0.542
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MRYQKNGRRY EALGRSSPTA RPCDGCHAVQ SVVYCHSDAK CLCVSRDKQV HSANQVAERA HVCEVCKSAS TVLTCCADAP ALCTTCDAKL HSANTLSQRH
101: QRVPVLPLPA AAIQTTSSFD EGKAFVITHG IKEEEEEVDS WLLLTEDSDY SNCTNSTATA NNNRNKKMGF GDVDQYFDLS GYNPYYHSNI TRNPEEQYMQ
201: EQQQIQRRYL EKEWNECAVP SQLTMVYEQQ QSVYGIGGAK NAVSVTSSIS LSSMEAGIVP DNTIAGISNL NILTTGGVDL LPVRSFQMPV HLSPRDRAAR
301: ILRYKEKRQA RNFNKTIRYA TRKAYAQARP RIKGRFTKIS DVELKVDLMS SPPDLPNSSY GTVPWF
101: QRVPVLPLPA AAIQTTSSFD EGKAFVITHG IKEEEEEVDS WLLLTEDSDY SNCTNSTATA NNNRNKKMGF GDVDQYFDLS GYNPYYHSNI TRNPEEQYMQ
201: EQQQIQRRYL EKEWNECAVP SQLTMVYEQQ QSVYGIGGAK NAVSVTSSIS LSSMEAGIVP DNTIAGISNL NILTTGGVDL LPVRSFQMPV HLSPRDRAAR
301: ILRYKEKRQA RNFNKTIRYA TRKAYAQARP RIKGRFTKIS DVELKVDLMS SPPDLPNSSY GTVPWF
001: MLKQESNDIG SGENNRARPC DTCRSNACTV YCHADSAYLC MSCDAQVHSA NRVASRHKRV RVCESCERAP AAFLCEADDA SLCTACDSEV HSANPLARRH
101: QRVPILPISG NSFSSMTTTH HQSEKTMTDP EKRLVVDQEE GEEGDKDAKE VASWLFPNSD KNNNNQNNGL LFSDEYLNLV DYNSSMDYKF TGEYSQHQQN
201: CSVPQTSYGG DRVVPLKLEE SRGHQCHNQQ NFQFNIKYGS SGTHYNDNGS INHNAYISSM ETGVVPESTA CVTTASHPRT PKGTVEQQPD PASQMITVTQ
301: LSPMDREARV LRYREKRKTR KFEKTIRYAS RKAYAEIRPR VNGRFAKREI EAEEQGFNTM LMYNTGYGIV PSF
101: QRVPILPISG NSFSSMTTTH HQSEKTMTDP EKRLVVDQEE GEEGDKDAKE VASWLFPNSD KNNNNQNNGL LFSDEYLNLV DYNSSMDYKF TGEYSQHQQN
201: CSVPQTSYGG DRVVPLKLEE SRGHQCHNQQ NFQFNIKYGS SGTHYNDNGS INHNAYISSM ETGVVPESTA CVTTASHPRT PKGTVEQQPD PASQMITVTQ
301: LSPMDREARV LRYREKRKTR KFEKTIRYAS RKAYAEIRPR VNGRFAKREI EAEEQGFNTM LMYNTGYGIV PSF
Arabidopsis Description
COZinc finger protein CONSTANS [Source:UniProtKB/Swiss-Prot;Acc:Q39057]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.