CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003162_P001	Maize	nucleus	92.4	95.0
Zm00001d025770_P001	Maize	nucleus	92.4	94.12
Os04t0497700-01	Rice	nucleus	83.89	82.88
TraesCS2A01G353900.1	Wheat	nucleus	78.72	81.96
TraesCS2B01G372000.1	Wheat	nucleus	78.72	81.19
TraesCS2D01G351900.1	Wheat	nucleus	78.42	80.88
EES05406	Sorghum	nucleus	67.78	66.37
GSMUA_Achr7P16370_001	Banana	nucleus	48.94	55.14
GSMUA_Achr10P...	Banana	nucleus	52.28	53.92
OQU84486	Sorghum	nucleus	45.59	38.46
EER90145	Sorghum	nucleus	43.16	37.77
EES14798	Sorghum	nucleus	29.79	33.56
EER88227	Sorghum	nucleus	41.03	32.85
OQU85473	Sorghum	nucleus	33.43	30.05
EES07342	Sorghum	nucleus	25.23	20.44
KXG19836	Sorghum	nucleus	24.92	19.95
EES14176	Sorghum	nucleus	25.84	17.35
EER94860	Sorghum	nucleus	21.58	17.19
EER99873	Sorghum	nucleus	21.28	16.95

Protein Annotations

MapMan:15.5.1.2	UniProt:C5YBH1	InterPro:CCT_domain	EnsemblPlants:EES12446	ProteinID:EES12446	ProteinID:EES12446.2
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF21	SMART:SM00336	EnsemblPlantsGene:SORBI_3006G135100
UniParc:UPI00081ADB8D	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:49816947..49818383

Molecular Weight (calculated)

34597.2 Da

IEP (calculated)

5.270

GRAVY (calculated)

-0.320

Length

329 amino acids

Sequence
(BLAST)

001: MEGDEKSAGG APAYWGLGAR PCDACGAEAA RLYCRADAAF LCAGCDARAH GAGSRHARVW LCEVCEHAPA AVTCRADAAA LCASCDADIH SANPLARRHE
101: RLPVAPFFGA LADAPKPFAS SAAAVPPKAT AGADDDGSSE AEAASWLLPE PDHGHKEEGA TTEVFFADSD PYLDLDFARS MDDIKTIGVQ GGPPELDLNG
201: AKLFYSDHSM NHSVSSSEAA VVPDAAAGAA PVVAVVSRGL EREARLMRYR EKRKSRRFEK TIRYASRKAY AETRPRIKGR FAKRTPGAGE DPLEEHEEMY
301: SSAAAAVAAL MAPGGADADY GVDGVVPTY

Best Arabidopsis Sequence Match ( AT5G57660.1 )
(BLAST)

001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF

Arabidopsis Description

COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.