CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017176_P001	Maize	nucleus	89.29	89.55
Zm00001d051047_P001	Maize	nucleus	77.98	83.44
Os02t0610500-01	Rice	nucleus	75.3	76.2
HORVU6Hr1G056000.2	Barley	nucleus	69.94	73.9
TraesCS6D01G202000.1	Wheat	nucleus	69.35	73.5
TraesCS6B01G248400.1	Wheat	nucleus	69.64	72.9
TraesCS6A01G218900.1	Wheat	nucleus	69.05	72.27
EES12446	Sorghum	nucleus	66.37	67.78
GSMUA_Achr7P16370_001	Banana	nucleus	45.54	52.4
GSMUA_Achr10P...	Banana	nucleus	47.92	50.47
EER90145	Sorghum	nucleus	44.64	39.89
OQU84486	Sorghum	nucleus	45.83	39.49
EES14798	Sorghum	nucleus	30.65	35.27
EER88227	Sorghum	nucleus	37.5	30.66
OQU85473	Sorghum	nucleus	30.65	28.14
EES07342	Sorghum	nucleus	23.21	19.21
KXG19836	Sorghum	nucleus	22.92	18.73
EER94860	Sorghum	nucleus	20.83	16.95
EES14176	Sorghum	nucleus	24.7	16.94
EER99873	Sorghum	nucleus	20.24	16.46

Protein Annotations

MapMan:15.5.1.2	EntrezGene:8059668	UniProt:C5XXA8	InterPro:CCT_domain	EnsemblPlants:EES05406	ProteinID:EES05406
ProteinID:EES05406.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0008270
GO:GO:0009416	GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	InterPro:IPR000315
InterPro:IPR010402	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319
PANTHER:PTHR31319:SF21	SMART:SM00336	EnsemblPlantsGene:SORBI_3004G211200	unigene:Sbi.10225	UniParc:UPI0001A852D3	RefSeq:XP_002452430.1
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:56100740..56102558

Molecular Weight (calculated)

35354.8 Da

IEP (calculated)

4.798

GRAVY (calculated)

-0.274

Length

336 amino acids

Sequence
(BLAST)

001: MDTAVELELE QKPAVGYWSV VGARPCDACA AEPARLHCRE DGAFLCPGCD ARAHGAGSRH ARVWLCEVCE HAPAAVTCRA DAAALCAACD ADIHSANPLA
101: RRHERLPVAP FFGALADAPQ PFPSPAFAAA AAAGGQAQGE AAAADNDDDD GSNEAEAASW LLAEPDNSHE DSAAATAADT LFAESDAYLG VDLDFARCMD
201: GVKAIGVPVA PPELDIAAGS FFYPEHSMNH SLSSSEVAVV PDAQAAGVPA VVSRGKEREA RLMRYREKRK NRRFDKTIRY ASRKAYAETR PRIKGRFAKR
301: CSAEADDDAL EHDEGACFSP AGSAHAASDG VVPSFC

Best Arabidopsis Sequence Match ( AT5G57660.1 )
(BLAST)

001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF

Arabidopsis Description

COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.