Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G056000.2 | Barley | nucleus | 74.7 | 77.99 |
| TraesCS6B01G248400.1 | Wheat | nucleus | 75.0 | 77.57 |
| TraesCS6D01G202000.1 | Wheat | nucleus | 73.49 | 76.97 |
| TraesCS6A01G218900.1 | Wheat | nucleus | 74.4 | 76.95 |
| EES05406 | Sorghum | nucleus | 76.2 | 75.3 |
| Zm00001d017176_P001 | Maize | nucleus | 73.19 | 72.54 |
| Zm00001d051047_P001 | Maize | nucleus | 67.77 | 71.66 |
| Os04t0497700-01 | Rice | nucleus | 68.98 | 68.77 |
| Os06t0654900-01 | Rice | nucleus | 16.27 | 66.67 |
| GSMUA_Achr7P16370_001 | Banana | nucleus | 45.78 | 52.05 |
| GSMUA_Achr10P... | Banana | nucleus | 49.1 | 51.1 |
| Os02t0178100-01 | Rice | nucleus | 41.87 | 41.99 |
| Os09t0240200-01 | Rice | nucleus | 31.63 | 31.34 |
| Os06t0275000-01 | Rice | mitochondrion | 36.75 | 30.89 |
| Os08t0249000-01 | Rice | nucleus | 13.86 | 25.56 |
| Os07t0667300-01 | Rice | nucleus | 25.3 | 22.11 |
| Os06t0298200-01 | Rice | nucleus | 24.1 | 19.61 |
| Os02t0724000-01 | Rice | nucleus | 23.49 | 19.16 |
| Os03t0351100-01 | Rice | nucleus | 23.19 | 19.11 |
| Os09t0509700-01 | Rice | nucleus | 24.7 | 19.03 |
| Os08t0536300-01 | Rice | nucleus | 24.1 | 16.39 |
Protein Annotations
| MapMan:15.5.1.2 | EntrezGene:4329950 | EMBL:AK100097 | ProteinID:BAD19225.1 | ProteinID:BAF09313.1 | ProteinID:BAS79707.1 |
| InterPro:CCT_domain | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008270 |
| GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 | InterPro:IPR000315 |
| InterPro:IPR010402 | EnsemblPlantsGene:Os02g0610500 | EnsemblPlants:Os02t0610500-01 | PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 |
| PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF21 | UniProt:Q6K9C5 | SMART:SM00336 | UniParc:UPI00003757D9 |
| RefSeq:XP_015625855.1 | InterPro:Znf_B-box | SEG:seg | : | : | : |
Description
CONSTANS-like gene 4, B-box-containing protein 5, CCT domain-containing gene 6, CCT (CO, CO-LIKE and TOC1) domain protein 6, CCT domain protein 6CO-like protein containing two B-box zinc finger domains and one CCT domain, Constitutive flowering repressor (Os02t0610500-01)
Coordinates
chr2:+:23989803..23991271
Molecular Weight (calculated)
34954.6 Da
IEP (calculated)
4.927
GRAVY (calculated)
-0.242
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAVEDKAMV GVGGAVAAGY SSSSWGLGTR ACDSCGGEAA RLYCRADGAF LCARCDARAH GAGSRHARVW LCEVCEHAPA AVTCRADAAA LCAACDADIH
101: SANPLARRHE RLPVAPFFGP LADAPQPFPF SQAAADAAAA REEDADDDRS NEAEAASWLL PEPDDNSHED SAAAADAFFA DTGAYLGVDL DFARSMDGIK
201: AIGVPVAPPE LDLTAGSLFY PEHSMAHSLS SSEVAIVPDA LSAGSAAPPM VVVVASKGKE REARLMRYRE KRKNRRFDKT IRYASRKAYA ETRPRIKGRF
301: AKRTADADDD DEAPCSPAFS ALAASDGVVP SF
101: SANPLARRHE RLPVAPFFGP LADAPQPFPF SQAAADAAAA REEDADDDRS NEAEAASWLL PEPDDNSHED SAAAADAFFA DTGAYLGVDL DFARSMDGIK
201: AIGVPVAPPE LDLTAGSLFY PEHSMAHSLS SSEVAIVPDA LSAGSAAPPM VVVVASKGKE REARLMRYRE KRKNRRFDKT IRYASRKAYA ETRPRIKGRF
301: AKRTADADDD DEAPCSPAFS ALAASDGVVP SF
001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF
Arabidopsis Description
COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.