Factsheet for Os02t0724000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0854800-03
Os10t0577800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	Os03t0854800-03	AT1G32230.1	19548978
AT5G48250.1	Os10t0577800-01	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07342	Sorghum	nucleus	77.89	78.08
HORVU6Hr1G071950.2	Barley	nucleus	72.97	77.75
TraesCS6D01G267100.1	Wheat	nucleus	73.96	76.79
Os06t0298200-01	Rice	nucleus	76.9	76.72
TraesCS6B01G315400.1	Wheat	nucleus	73.46	76.67
Zm00001d051684_P007	Maize	nucleus	76.41	76.6
TraesCS6A01G286400.3	Wheat	nucleus	72.73	75.9
Zm00001d017885_P001	Maize	nucleus	70.02	61.82
GSMUA_Achr7P20150_001	Banana	nucleus	62.16	61.41
GSMUA_Achr10P...	Banana	nucleus	58.72	59.6
AT3G07650.1	Thale cress	nucleus	51.84	56.72
KRG89998	Soybean	nucleus	56.76	56.48
Bra001264.1-P	Field mustard	nucleus	48.65	56.41
CDY35952	Canola	nucleus	51.11	56.37
KRH72628	Soybean	nucleus	56.02	56.3
VIT_00s0194g00070.t01	Wine grape	nucleus	57.25	56.28
KRH17709	Soybean	nucleus	56.27	55.99
CDY07979	Canola	nucleus	48.4	55.97
CDY28029	Canola	nucleus	51.11	55.91
KRH16989	Soybean	nucleus	56.27	55.72
VIT_12s0057g01350.t01	Wine grape	nucleus	56.76	55.66
Bra040020.1-P	Field mustard	nucleus	49.63	55.19
CDY22125	Canola	nucleus	48.89	54.37
CDX85321	Canola	nucleus	47.91	54.32
AT5G48250.1	Thale cress	nucleus	49.63	54.16
Bra029666.1-P	Field mustard	nucleus	51.11	53.89
CDY48743	Canola	nucleus	46.19	53.71
GSMUA_Achr5P22460_001	Banana	nucleus	51.6	53.71
Bra020709.1-P	Field mustard	nucleus	46.19	53.56
CDX86318	Canola	nucleus	46.93	53.35
Bra037499.1-P	Field mustard	nucleus	44.72	52.75
CDY05691	Canola	nucleus	44.96	52.74
CDX74034	Canola	nucleus	48.89	51.03
PGSC0003DMT400074143	Potato	nucleus	50.12	50.0
PGSC0003DMT400013624	Potato	nucleus	50.12	49.39
Solyc05g020020.2.1	Tomato	nucleus	49.63	49.27
PGSC0003DMT400044878	Potato	nucleus	48.89	48.42
Solyc07g045180.2.1	Tomato	nucleus	49.63	48.33
Solyc12g006240.1.1	Tomato	nucleus	28.5	43.12
Os06t0654900-01	Rice	nucleus	7.37	37.04
Os04t0497700-01	Rice	nucleus	19.41	23.72
Os02t0610500-01	Rice	nucleus	19.16	23.49
Os09t0509700-01	Rice	nucleus	23.34	22.04
Os06t0275000-01	Rice	mitochondrion	21.13	21.77
Os07t0667300-01	Rice	nucleus	20.15	21.58
Os02t0178100-01	Rice	nucleus	16.71	20.54
Os03t0351100-01	Rice	nucleus	20.15	20.35
Os08t0536300-01	Rice	nucleus	24.32	20.29
Os09t0240200-01	Rice	nucleus	13.76	16.72
Os08t0249000-01	Rice	nucleus	4.42	10.0

Protein Annotations

MapMan:15.5.1.2	EntrezGene:4330574	EMBL:AB001888	ProteinID:AGG54061.1	EMBL:AK071630	ProteinID:BAD13036.1
ProteinID:BAF09889.1	ProteinID:BAS80677.1	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315
InterPro:IPR010402	UniProt:O82118	EnsemblPlantsGene:Os02g0724000	EnsemblPlants:Os02t0724000-01	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF6	SMART:SM00336	UniParc:UPI00000ACDA2	RefSeq:XP_015627427.1
RefSeq:XP_015627428.1	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

CONSTANS-like gene N, B-box-containing protein 7, CCT domain-containing gene 8, CCT (CO, CO-LIKE and TOC1) domain protein 8, CCT domain protein 8, Days to heading on chromosome 2CONSTANS-like protein, Heading promotion under long-day condition (Os02t0724000-01)

Coordinates

chr2:+:30094300..30099072

Molecular Weight (calculated)

44329.4 Da

IEP (calculated)

4.903

GRAVY (calculated)

-0.581

Length

407 amino acids

Sequence
(BLAST)

001: MDALCDFCRE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CVGQPAAVRC LEENTSLCQN CDWNGHGAAS SAAGHKRQTI NCYSGCPSSA
101: ELSRIWSFSM DIPTVAAEPN CEEGINMMSI NDNDVNNHCG APEDGRLLDI ASTALMSDLP TGDKFKPLIG SSSGDGMNLL PLNSDQPAEP VSTTPKAPCV
201: TDKDMFNDGS VYGDFCVDDA DLTFENYEEL FGTSHVQTEQ LFDDAGIDSY FEMKDVPADE SNEQPKPVQP ECSNVASVDS GMSNPAARAD SSHCIPGRQA
301: ISNISLSFSG LTGESSAGYF QDCGVSSMIL MGEPPWHPPG PESSSAGGSR DNALTRYKEK KKRRKFDKKI RYASRKARAD VRKRVKGRFV KAGEAYDYDP
401: LSQTRSY

Best Arabidopsis Sequence Match ( AT3G07650.3 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY

Arabidopsis Description

COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.