Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48743 | Canola | nucleus | 78.55 | 83.71 |
| Bra020709.1-P | Field mustard | nucleus | 78.28 | 83.19 |
| CDY05691 | Canola | nucleus | 76.14 | 81.84 |
| CDX85321 | Canola | nucleus | 78.55 | 81.62 |
| CDX86318 | Canola | nucleus | 77.48 | 80.73 |
| Bra037499.1-P | Field mustard | nucleus | 73.99 | 80.0 |
| AT3G07650.1 | Thale cress | nucleus | 70.24 | 70.43 |
| KRH72628 | Soybean | nucleus | 60.32 | 55.56 |
| KRH17709 | Soybean | nucleus | 60.86 | 55.5 |
| KRH16989 | Soybean | nucleus | 60.86 | 55.23 |
| VIT_12s0057g01350.t01 | Wine grape | nucleus | 61.13 | 54.94 |
| KRG89998 | Soybean | nucleus | 60.05 | 54.77 |
| VIT_00s0194g00070.t01 | Wine grape | nucleus | 56.84 | 51.21 |
| PGSC0003DMT400074143 | Potato | nucleus | 55.5 | 50.74 |
| Os02t0724000-01 | Rice | nucleus | 54.16 | 49.63 |
| KXG19836 | Sorghum | nucleus | 54.42 | 49.39 |
| Os06t0298200-01 | Rice | nucleus | 53.89 | 49.26 |
| Solyc05g020020.2.1 | Tomato | nucleus | 53.35 | 48.54 |
| TraesCS7D01G220300.1 | Wheat | nucleus | 51.21 | 48.23 |
| TraesCS7A01G218600.1 | Wheat | nucleus | 51.21 | 48.23 |
| TraesCS6A01G286400.3 | Wheat | nucleus | 50.4 | 48.21 |
| PGSC0003DMT400013624 | Potato | nucleus | 53.35 | 48.18 |
| HORVU6Hr1G071950.2 | Barley | nucleus | 49.33 | 48.17 |
| PGSC0003DMT400044878 | Potato | nucleus | 52.81 | 47.93 |
| EES07342 | Sorghum | nucleus | 52.01 | 47.78 |
| TraesCS6D01G267100.1 | Wheat | nucleus | 49.87 | 47.45 |
| Solyc07g045180.2.1 | Tomato | nucleus | 53.08 | 47.37 |
| GSMUA_Achr10P... | Banana | nucleus | 50.4 | 46.88 |
| GSMUA_Achr3P04260_001 | Banana | nucleus | 52.55 | 46.67 |
| GSMUA_Achr7P20150_001 | Banana | nucleus | 51.47 | 46.6 |
| TraesCS6B01G315400.1 | Wheat | nucleus | 48.53 | 46.41 |
| Zm00001d051684_P007 | Maize | nucleus | 50.4 | 46.31 |
| GSMUA_Achr5P22460_001 | Banana | nucleus | 47.72 | 45.52 |
| Solyc12g006240.1.1 | Tomato | nucleus | 32.44 | 44.98 |
| Zm00001d045804_P003 | Maize | nucleus | 52.55 | 44.95 |
| GSMUA_Achr5P04270_001 | Banana | nucleus | 50.67 | 44.79 |
| GSMUA_Achr9P12860_001 | Banana | nucleus | 49.87 | 44.6 |
| TraesCS7B01G125500.1 | Wheat | cytosol, nucleus, plastid | 39.68 | 43.92 |
| Zm00001d017885_P001 | Maize | nucleus | 45.31 | 36.66 |
| AT4G15250.1 | Thale cress | nucleus | 31.64 | 35.76 |
| AT3G21880.2 | Thale cress | nucleus | 32.17 | 32.61 |
| AT2G47890.1 | Thale cress | nucleus | 21.18 | 23.8 |
| AT1G68190.2 | Thale cress | extracellular, golgi, vacuole | 24.13 | 23.38 |
| AT2G33500.1 | Thale cress | nucleus | 24.66 | 22.89 |
| AT2G24790.1 | Thale cress | nucleus, plastid | 17.69 | 22.45 |
| AT5G15850.1 | Thale cress | nucleus | 20.91 | 21.97 |
| AT3G02380.1 | Thale cress | nucleus | 20.38 | 21.9 |
| AT1G28050.1 | Thale cress | nucleus | 25.2 | 21.71 |
| AT5G15840.1 | Thale cress | nucleus | 21.45 | 21.45 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 19.84 | 20.85 |
| AT5G24930.1 | Thale cress | nucleus | 19.3 | 19.89 |
Protein Annotations
| MapMan:15.5.1.2 | EntrezGene:834878 | UniProt:A0A178UQF1 | ProteinID:AED95643.1 | ArrayExpress:AT5G48250 | EnsemblPlantsGene:AT5G48250 |
| RefSeq:AT5G48250 | TAIR:AT5G48250 | RefSeq:AT5G48250-TAIR-G | EnsemblPlants:AT5G48250.1 | TAIR:AT5G48250.1 | EMBL:AY039957 |
| EMBL:AY142607 | Unigene:At.7080 | ProteinID:BAA97005.1 | InterPro:CCT_domain | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005886 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0046872 | InterPro:IPR000315 | InterPro:IPR010402 |
| RefSeq:NP_199636.1 | ProteinID:OAO96266.1 | PFAM:PF06203 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020094 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50119 | PFscan:PS51017 |
| PANTHER:PTHR31717 | PANTHER:PTHR31717:SF39 | UniProt:Q9LUA9 | SMART:SM00336 | UniParc:UPI00000017FE | InterPro:Znf_B-box |
| SEG:seg | : | : | : | : | : |
Description
COL10Zinc finger protein CONSTANS-LIKE 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUA9]
Coordinates
chr5:-:19561319..19563832
Molecular Weight (calculated)
41246.8 Da
IEP (calculated)
5.970
GRAVY (calculated)
-0.687
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CNAQPASVRC SDERVSLCQN CDWSGHDGKN STTTSHHKRQ TINCYSGCPS
101: SAELSSIWSF CMDLNISSAE ESACEQGMGL MTIDEDGTGE KSGVQKINVE QPETSSAAQG MDHSSVPENS SMAKELGVCE DDFNGNLISD EVDLALENYE
201: ELFGSAFNSS RYLFEHGGIG SLFEKDEAHE GSMQQPALSN NASADSFMTC RTEPIICYSS KPAHSNISFS GITGESNAGD FQDCGASSMK QLSREPQPWC
301: HPTAQDIIAS SHATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR VKGRFVKSGE AYDYDPMSPT RSY
101: SAELSSIWSF CMDLNISSAE ESACEQGMGL MTIDEDGTGE KSGVQKINVE QPETSSAAQG MDHSSVPENS SMAKELGVCE DDFNGNLISD EVDLALENYE
201: ELFGSAFNSS RYLFEHGGIG SLFEKDEAHE GSMQQPALSN NASADSFMTC RTEPIICYSS KPAHSNISFS GITGESNAGD FQDCGASSMK QLSREPQPWC
301: HPTAQDIIAS SHATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR VKGRFVKSGE AYDYDPMSPT RSY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.