Factsheet for Solyc05g020020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g005270.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	Solyc08g005270.2.1	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013624	Potato	nucleus	93.41	92.74
Solyc07g045180.2.1	Tomato	nucleus	67.56	66.27
Solyc12g006240.1.1	Tomato	nucleus	41.22	62.83
KRH17709	Soybean	nucleus	61.95	62.1
KRG89998	Soybean	nucleus	61.22	61.37
KRH72628	Soybean	nucleus	60.0	60.74
KRH16989	Soybean	nucleus	60.24	60.1
VIT_12s0057g01350.t01	Wine grape	nucleus	60.49	59.76
VIT_00s0194g00070.t01	Wine grape	nucleus	58.29	57.73
AT3G07650.1	Thale cress	nucleus	51.71	56.99
Bra001264.1-P	Field mustard	nucleus	48.29	56.41
CDY35952	Canola	nucleus	50.73	56.37
CDY22125	Canola	nucleus	49.51	55.46
CDY07979	Canola	nucleus	47.56	55.4
Bra040020.1-P	Field mustard	nucleus	49.02	54.92
CDY28029	Canola	nucleus	49.76	54.84
CDY48743	Canola	nucleus	46.34	54.29
CDX85321	Canola	nucleus	47.07	53.76
Bra029666.1-P	Field mustard	nucleus	50.49	53.63
Bra020709.1-P	Field mustard	nucleus	45.85	53.56
AT5G48250.1	Thale cress	nucleus	48.54	53.35
CDX86318	Canola	nucleus	45.85	52.51
CDY05691	Canola	nucleus	44.39	52.45
Bra037499.1-P	Field mustard	nucleus	43.66	51.88
Os06t0298200-01	Rice	nucleus	50.73	50.98
CDX74034	Canola	nucleus	48.05	50.51
KXG19836	Sorghum	nucleus	50.49	50.37
GSMUA_Achr3P04260_001	Banana	nucleus	51.22	50.0
Os02t0724000-01	Rice	nucleus	49.27	49.63
TraesCS6B01G315400.1	Wheat	nucleus	46.83	49.23
GSMUA_Achr9P12860_001	Banana	nucleus	50.0	49.16
HORVU6Hr1G071950.2	Barley	nucleus	45.61	48.95
GSMUA_Achr5P22460_001	Banana	nucleus	46.59	48.85
TraesCS7D01G220300.1	Wheat	nucleus	47.07	48.74
TraesCS7A01G218600.1	Wheat	nucleus	47.07	48.74
TraesCS6D01G267100.1	Wheat	nucleus	46.34	48.47
TraesCS6A01G286400.3	Wheat	nucleus	46.1	48.46
GSMUA_Achr7P20150_001	Banana	nucleus	48.54	48.3
GSMUA_Achr10P...	Banana	nucleus	46.59	47.63
GSMUA_Achr5P04270_001	Banana	nucleus	49.02	47.63
EES07342	Sorghum	nucleus	47.07	47.54
Zm00001d045804_P003	Maize	nucleus	50.0	47.02
Zm00001d051684_P007	Maize	nucleus	46.34	46.8
TraesCS7B01G125500.1	Wheat	cytosol, nucleus, plastid	36.34	44.21
Zm00001d017885_P001	Maize	nucleus	41.22	36.66
Solyc05g046040.1.1	Tomato	nucleus	35.85	35.08
Solyc02g089500.2.1	Tomato	nucleus	8.78	25.35
Solyc04g007470.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	26.59	22.95
Solyc12g096500.1.1	Tomato	nucleus	20.0	22.91
Solyc05g024010.2.1	Tomato	nucleus	25.12	22.79
Solyc08g006530.2.1	Tomato	nucleus	19.27	22.64
Solyc09g074560.2.1	Tomato	nucleus	20.0	21.98
Solyc02g089540.2.1	Tomato	nucleus	20.73	21.74
Solyc02g089520.1.1	Tomato	nucleus	19.51	19.56
Solyc07g006630.2.1	Tomato	nucleus	18.29	19.43

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402
UniProt:K4BZF4	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF39
SMART:SM00336	EnsemblPlantsGene:Solyc05g020020.2	EnsemblPlants:Solyc05g020020.2.1	UniParc:UPI00027656AB	InterPro:Znf_B-box	SEG:seg

Description

No Description!

Coordinates

chr5:-:25874229..25879668

Molecular Weight (calculated)

44523.8 Da

IEP (calculated)

5.487

GRAVY (calculated)

-0.482

Length

410 amino acids

Sequence
(BLAST)

001: MCEFCGEQRS IVYCRSDAAC LCLSCDRNVH SANALSQRHS RTLLCERCNS QPAIVRRVEE KVSLCKNCDS IGHAGSGTGS VHNRQALSSY TGCPSAAELS
101: TIWSFLLDNS LGGDSTCEKG MGSMSITDNR LTDSRAPQGK FNSQDASATV EVSEIHTPGK SSILVGSSMP NLGSKLNKVE HIAGSVNISS SKDCYSGVKA
201: STIYEDDPFS QDFNMDEVDL SFENYEELFS GSLDNPNQLF ENDDIDGLFG TKDMSVSDSS CQDANAVEGS SIRTVMSILP ACSKAESADS LMSCKTEPTV
301: CFARQASILS FSNLGGESNG GDYQECGAST MLLMGEPPWC HPCPESSLAS SSRSDAVLRY KEKKKTRKFD KHVRYASRKA RADVRRRVKG RFVKAGDAYD
401: YDPLNETRSF

Best Arabidopsis Sequence Match ( AT5G48250.1 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CNAQPASVRC SDERVSLCQN CDWSGHDGKN STTTSHHKRQ TINCYSGCPS
101: SAELSSIWSF CMDLNISSAE ESACEQGMGL MTIDEDGTGE KSGVQKINVE QPETSSAAQG MDHSSVPENS SMAKELGVCE DDFNGNLISD EVDLALENYE
201: ELFGSAFNSS RYLFEHGGIG SLFEKDEAHE GSMQQPALSN NASADSFMTC RTEPIICYSS KPAHSNISFS GITGESNAGD FQDCGASSMK QLSREPQPWC
301: HPTAQDIIAS SHATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR VKGRFVKSGE AYDYDPMSPT RSY

Arabidopsis Description

COL10Zinc finger protein CONSTANS-LIKE 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.