Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001264.1-P | Field mustard | nucleus | 83.06 | 88.03 |
| CDY35952 | Canola | nucleus | 87.1 | 87.8 |
| CDY28029 | Canola | nucleus | 87.37 | 87.37 |
| Bra040020.1-P | Field mustard | nucleus | 85.48 | 86.89 |
| CDY07979 | Canola | nucleus | 81.72 | 86.36 |
| CDY22125 | Canola | nucleus | 84.95 | 86.34 |
| Bra029666.1-P | Field mustard | nucleus | 87.37 | 84.2 |
| CDX74034 | Canola | nucleus | 82.8 | 78.97 |
| AT5G48250.1 | Thale cress | nucleus | 70.43 | 70.24 |
| KRH17709 | Soybean | nucleus | 64.78 | 58.92 |
| KRH72628 | Soybean | nucleus | 63.44 | 58.27 |
| KRG89998 | Soybean | nucleus | 63.98 | 58.19 |
| VIT_12s0057g01350.t01 | Wine grape | nucleus | 63.71 | 57.11 |
| KRH16989 | Soybean | nucleus | 62.9 | 56.93 |
| PGSC0003DMT400074143 | Potato | nucleus | 59.41 | 54.17 |
| VIT_00s0194g00070.t01 | Wine grape | nucleus | 58.6 | 52.66 |
| Os06t0298200-01 | Rice | nucleus | 56.99 | 51.96 |
| Os02t0724000-01 | Rice | nucleus | 56.72 | 51.84 |
| Solyc05g020020.2.1 | Tomato | nucleus | 56.99 | 51.71 |
| KXG19836 | Sorghum | nucleus | 56.99 | 51.58 |
| PGSC0003DMT400013624 | Potato | nucleus | 56.99 | 51.33 |
| TraesCS7D01G220300.1 | Wheat | nucleus | 54.3 | 51.01 |
| TraesCS7A01G218600.1 | Wheat | nucleus | 54.03 | 50.76 |
| PGSC0003DMT400044878 | Potato | nucleus | 55.65 | 50.37 |
| Solyc07g045180.2.1 | Tomato | nucleus | 56.18 | 50.0 |
| TraesCS6A01G286400.3 | Wheat | nucleus | 52.15 | 49.74 |
| HORVU6Hr1G071950.2 | Barley | nucleus | 50.81 | 49.48 |
| Zm00001d051684_P007 | Maize | nucleus | 53.76 | 49.26 |
| EES07342 | Sorghum | nucleus | 53.49 | 49.01 |
| TraesCS6D01G267100.1 | Wheat | nucleus | 51.61 | 48.98 |
| TraesCS6B01G315400.1 | Wheat | nucleus | 51.08 | 48.72 |
| Zm00001d045804_P003 | Maize | nucleus | 56.18 | 47.94 |
| GSMUA_Achr3P04260_001 | Banana | nucleus | 54.03 | 47.86 |
| Solyc12g006240.1.1 | Tomato | nucleus | 34.41 | 47.58 |
| GSMUA_Achr9P12860_001 | Banana | nucleus | 52.69 | 47.0 |
| GSMUA_Achr5P22460_001 | Banana | nucleus | 48.92 | 46.55 |
| GSMUA_Achr7P20150_001 | Banana | nucleus | 51.34 | 46.36 |
| TraesCS7B01G125500.1 | Wheat | cytosol, nucleus, plastid | 41.94 | 46.29 |
| GSMUA_Achr5P04270_001 | Banana | nucleus | 52.15 | 45.97 |
| GSMUA_Achr10P... | Banana | nucleus | 48.92 | 45.39 |
| Zm00001d017885_P001 | Maize | nucleus | 46.24 | 37.31 |
| AT4G15250.1 | Thale cress | nucleus | 31.72 | 35.76 |
| AT3G21880.2 | Thale cress | nucleus | 31.99 | 32.34 |
| AT2G33500.1 | Thale cress | nucleus | 27.15 | 25.12 |
| AT2G24790.1 | Thale cress | nucleus, plastid | 19.09 | 24.15 |
| AT2G47890.1 | Thale cress | nucleus | 20.97 | 23.49 |
| AT5G15850.1 | Thale cress | nucleus | 22.04 | 23.1 |
| AT3G02380.1 | Thale cress | nucleus | 21.51 | 23.05 |
| AT1G28050.1 | Thale cress | nucleus | 26.61 | 22.86 |
| AT1G68190.2 | Thale cress | extracellular, golgi, vacuole | 23.39 | 22.6 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 20.97 | 21.97 |
| AT5G24930.1 | Thale cress | nucleus | 21.24 | 21.82 |
| AT5G15840.1 | Thale cress | nucleus | 21.77 | 21.72 |
Protein Annotations
| MapMan:15.5.1.2 | EntrezGene:819956 | UniProt:A0A178VBL6 | UniProt:A1A6H1 | ProteinID:AAF13083.1 | ProteinID:AEE74580.1 |
| ProteinID:AEE74581.1 | ProteinID:AEE74582.1 | ProteinID:AEE74583.1 | EMBL:AK316934 | ArrayExpress:AT3G07650 | EnsemblPlantsGene:AT3G07650 |
| RefSeq:AT3G07650 | TAIR:AT3G07650 | RefSeq:AT3G07650-TAIR-G | EnsemblPlants:AT3G07650.1 | TAIR:AT3G07650.1 | EMBL:AY049290 |
| Unigene:At.18337 | EMBL:BT029490 | InterPro:CCT_domain | Symbol:COL9 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0007623 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009987 |
| GO:GO:0046872 | GO:GO:0048579 | InterPro:IPR000315 | InterPro:IPR010402 | RefSeq:NP_001030659.1 | RefSeq:NP_001118599.1 |
| RefSeq:NP_187422.1 | RefSeq:NP_974250.1 | ProteinID:OAP03589.1 | PFAM:PF06203 | PO:PO:0000013 | PO:PO:0000014 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF39 |
| UniProt:Q9SSE5 | SMART:SM00336 | UniParc:UPI0000127E50 | InterPro:Znf_B-box | SEG:seg | : |
Description
COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
Coordinates
chr3:+:2441569..2444532
Molecular Weight (calculated)
40756.1 Da
IEP (calculated)
6.235
GRAVY (calculated)
-0.678
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.