Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48250.1 | KRH39574 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | KRH74370 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | KRH74373 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH72628 | Soybean | nucleus | 93.43 | 94.81 |
| KRG89998 | Soybean | nucleus | 81.27 | 81.66 |
| KRH17709 | Soybean | nucleus | 81.02 | 81.42 |
| VIT_12s0057g01350.t01 | Wine grape | nucleus | 68.13 | 67.47 |
| CDY35952 | Canola | nucleus | 57.91 | 64.5 |
| Bra001264.1-P | Field mustard | nucleus | 54.26 | 63.53 |
| VIT_00s0194g00070.t01 | Wine grape | nucleus | 63.99 | 63.53 |
| CDY28029 | Canola | nucleus | 57.18 | 63.17 |
| AT3G07650.1 | Thale cress | nucleus | 56.93 | 62.9 |
| CDY07979 | Canola | nucleus | 53.53 | 62.5 |
| Bra029666.1-P | Field mustard | nucleus | 57.91 | 61.66 |
| Bra040020.1-P | Field mustard | nucleus | 54.5 | 61.2 |
| CDY22125 | Canola | nucleus | 54.5 | 61.2 |
| CDY48743 | Canola | nucleus | 52.07 | 61.14 |
| AT5G48250.1 | Thale cress | nucleus | 55.23 | 60.86 |
| CDX85321 | Canola | nucleus | 52.8 | 60.45 |
| Bra020709.1-P | Field mustard | nucleus | 51.58 | 60.4 |
| Solyc05g020020.2.1 | Tomato | nucleus | 60.1 | 60.24 |
| CDY05691 | Canola | nucleus | 50.85 | 60.23 |
| PGSC0003DMT400013624 | Potato | nucleus | 59.85 | 59.56 |
| PGSC0003DMT400074143 | Potato | nucleus | 59.12 | 59.56 |
| CDX86318 | Canola | nucleus | 51.34 | 58.94 |
| Bra037499.1-P | Field mustard | nucleus | 48.66 | 57.97 |
| CDX74034 | Canola | nucleus | 54.99 | 57.95 |
| GSMUA_Achr3P04260_001 | Banana | nucleus | 58.64 | 57.38 |
| PGSC0003DMT400044878 | Potato | nucleus | 57.18 | 57.18 |
| Os02t0724000-01 | Rice | nucleus | 55.72 | 56.27 |
| Solyc07g045180.2.1 | Tomato | nucleus | 57.18 | 56.22 |
| GSMUA_Achr9P12860_001 | Banana | nucleus | 56.69 | 55.88 |
| GSMUA_Achr10P... | Banana | nucleus | 53.77 | 55.11 |
| GSMUA_Achr7P20150_001 | Banana | nucleus | 54.99 | 54.85 |
| Os06t0298200-01 | Rice | nucleus | 54.26 | 54.66 |
| KXG19836 | Sorghum | nucleus | 54.26 | 54.26 |
| GSMUA_Achr5P22460_001 | Banana | nucleus | 51.09 | 53.71 |
| TraesCS7D01G220300.1 | Wheat | nucleus | 51.58 | 53.54 |
| Solyc12g006240.1.1 | Tomato | nucleus | 35.04 | 53.53 |
| TraesCS7A01G218600.1 | Wheat | nucleus | 51.34 | 53.28 |
| EES07342 | Sorghum | nucleus | 51.58 | 52.22 |
| HORVU6Hr1G071950.2 | Barley | nucleus | 48.42 | 52.09 |
| TraesCS6A01G286400.3 | Wheat | nucleus | 49.39 | 52.05 |
| Zm00001d051684_P007 | Maize | nucleus | 50.85 | 51.48 |
| GSMUA_Achr5P04270_001 | Banana | nucleus | 52.8 | 51.42 |
| TraesCS6D01G267100.1 | Wheat | nucleus | 48.91 | 51.28 |
| TraesCS6B01G315400.1 | Wheat | nucleus | 48.42 | 51.03 |
| Zm00001d045804_P003 | Maize | nucleus | 53.77 | 50.69 |
| TraesCS7B01G125500.1 | Wheat | cytosol, nucleus, plastid | 40.88 | 49.85 |
| Zm00001d017885_P001 | Maize | nucleus | 46.23 | 41.21 |
| KRH26833 | Soybean | nucleus | 39.66 | 38.53 |
| KRH22524 | Soybean | nucleus | 38.2 | 37.12 |
| KRH61628 | Soybean | nucleus, plastid | 20.68 | 27.51 |
| KRH52295 | Soybean | nucleus, plastid | 20.68 | 27.42 |
| KRG96381 | Soybean | nucleus | 22.38 | 26.21 |
| KRH68113 | Soybean | nucleus | 22.14 | 26.07 |
| KRH18308 | Soybean | nucleus | 22.87 | 26.04 |
| KRG93763 | Soybean | nucleus | 22.87 | 25.68 |
| KRH45169 | Soybean | nucleus | 21.65 | 25.57 |
| KRH01455 | Soybean | nucleus | 21.41 | 25.0 |
| KRH31920 | Soybean | nucleus | 20.92 | 24.71 |
| KRH71535 | Soybean | nucleus | 20.19 | 24.41 |
| KRH18980 | Soybean | nucleus | 21.17 | 23.84 |
| KRH02915 | Soybean | nucleus | 21.41 | 23.53 |
| KRG94656 | Soybean | nucleus | 21.9 | 23.38 |
| KRH06865 | Soybean | nucleus | 20.19 | 21.78 |
| KRG90917 | Soybean | nucleus | 22.87 | 21.46 |
| KRH35868 | Soybean | nucleus | 22.87 | 21.46 |
Protein Annotations
| EntrezGene:100783016 | MapMan:15.5.1.2 | EMBL:ACUP02009039 | InterPro:CCT_domain | EnsemblPlantsGene:GLYMA_14G190400 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0008270 | UniProt:I1MB79 | InterPro:IPR000315 | InterPro:IPR010402 | ProteinID:KRH16988.1 | EnsemblPlants:KRH16989 |
| ProteinID:KRH16989 | ProteinID:KRH16989.1 | ProteinID:KRH16990.1 | ProteinID:KRH16991.1 | ProteinID:KRH16992.1 | PFAM:PF06203 |
| PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF39 | SMART:SM00336 | UniParc:UPI000233B28D |
| InterPro:Znf_B-box | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr14:-:45536719..45544087
Molecular Weight (calculated)
44924.4 Da
IEP (calculated)
5.083
GRAVY (calculated)
-0.497
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYLCDFCGD QRSLVYCRSD AACLCLSCDR NVHSANALSR RHSRTLVCER CNSQPAFVRC VDEKISLCQN CDWLGHGTSP SSSTHKRQSI NCYSGCPSAA
101: EFSSIWSFFL DIPSMGEACE QELGLMSINE NSNKNAWASP EGQNVSGSAE VTDLPSKGKS WAGTSSVPES SSEPRILDQP PGPANECMPK LYCPGKKVSG
201: IYEDDDLYDD FIMDEVDLQL ENYEELFGMA LSHSEELFEN GGINSLFETK DMSASAGDSH CQGAVAAEGS SAELVNAIQP ACSNAASADS MMSTKTEPIV
301: CFTARQSLSN ISFSGVTKDS VGDYQDCGAS SMLLMGEPPW CPPCPESSLH SANRSNAVMR YKEKKKTRKF EKKVRYASRK ARADVRKRVK GRFVKAGDVY
401: DYDPLNQTRS C
101: EFSSIWSFFL DIPSMGEACE QELGLMSINE NSNKNAWASP EGQNVSGSAE VTDLPSKGKS WAGTSSVPES SSEPRILDQP PGPANECMPK LYCPGKKVSG
201: IYEDDDLYDD FIMDEVDLQL ENYEELFGMA LSHSEELFEN GGINSLFETK DMSASAGDSH CQGAVAAEGS SAELVNAIQP ACSNAASADS MMSTKTEPIV
301: CFTARQSLSN ISFSGVTKDS VGDYQDCGAS SMLLMGEPPW CPPCPESSLH SANRSNAVMR YKEKKKTRKF EKKVRYASRK ARADVRKRVK GRFVKAGDVY
401: DYDPLNQTRS C
001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
Arabidopsis Description
COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.