Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G125500.1 | Wheat | cytosol, nucleus, plastid | 84.85 | 99.7 |
| TraesCS7A01G218600.1 | Wheat | nucleus | 98.99 | 98.99 |
| Os06t0298200-01 | Rice | nucleus | 81.57 | 79.17 |
| KXG19836 | Sorghum | nucleus | 80.3 | 77.37 |
| Zm00001d045804_P003 | Maize | nucleus | 79.8 | 72.48 |
| TraesCS6D01G267100.1 | Wheat | nucleus | 65.15 | 65.82 |
| GSMUA_Achr7P20150_001 | Banana | nucleus | 57.83 | 55.58 |
| VIT_00s0194g00070.t01 | Wine grape | nucleus | 57.58 | 55.07 |
| GSMUA_Achr10P... | Banana | nucleus | 55.3 | 54.61 |
| CDY35952 | Canola | nucleus | 50.76 | 54.47 |
| AT3G07650.1 | Thale cress | nucleus | 51.01 | 54.3 |
| CDY28029 | Canola | nucleus | 51.01 | 54.3 |
| Bra001264.1-P | Field mustard | nucleus | 47.73 | 53.85 |
| Bra040020.1-P | Field mustard | nucleus | 49.75 | 53.83 |
| CDY07979 | Canola | nucleus | 47.73 | 53.69 |
| CDY22125 | Canola | nucleus | 49.24 | 53.28 |
| VIT_12s0057g01350.t01 | Wine grape | nucleus | 55.56 | 53.01 |
| KRH72628 | Soybean | nucleus | 53.54 | 52.35 |
| KRH17709 | Soybean | nucleus | 54.04 | 52.32 |
| KRG89998 | Soybean | nucleus | 53.79 | 52.08 |
| Bra029666.1-P | Field mustard | nucleus | 50.76 | 52.07 |
| KRH16989 | Soybean | nucleus | 53.54 | 51.58 |
| CDX85321 | Canola | nucleus | 46.72 | 51.53 |
| AT5G48250.1 | Thale cress | nucleus | 48.23 | 51.21 |
| CDY48743 | Canola | nucleus | 44.95 | 50.86 |
| CDY05691 | Canola | nucleus | 44.19 | 50.43 |
| CDX86318 | Canola | nucleus | 45.45 | 50.28 |
| Bra020709.1-P | Field mustard | nucleus | 44.44 | 50.14 |
| PGSC0003DMT400074143 | Potato | nucleus | 51.26 | 49.75 |
| Bra037499.1-P | Field mustard | nucleus | 43.18 | 49.57 |
| GSMUA_Achr5P22460_001 | Banana | nucleus | 48.74 | 49.36 |
| CDX74034 | Canola | nucleus | 47.73 | 48.46 |
| PGSC0003DMT400044878 | Potato | nucleus | 49.75 | 47.93 |
| PGSC0003DMT400013624 | Potato | nucleus | 49.75 | 47.7 |
| Solyc07g045180.2.1 | Tomato | nucleus | 49.75 | 47.13 |
| Solyc05g020020.2.1 | Tomato | nucleus | 48.74 | 47.07 |
| Solyc12g006240.1.1 | Tomato | nucleus | 30.56 | 44.98 |
| TraesCS6D01G202000.1 | Wheat | nucleus | 19.19 | 23.97 |
| TraesCS2D01G351900.1 | Wheat | nucleus | 19.19 | 23.82 |
| TraesCS2D01G121400.1 | Wheat | nucleus | 21.46 | 22.31 |
| TraesCS6D01G269500.1 | Wheat | nucleus | 20.71 | 22.22 |
| TraesCS4D01G167300.1 | Wheat | nucleus | 20.71 | 20.65 |
| TraesCS7D01G264300.1 | Wheat | nucleus | 24.75 | 20.04 |
| TraesCS7D01G213000.2 | Wheat | nucleus | 19.19 | 19.84 |
| TraesCS7D01G131700.1 | Wheat | nucleus | 12.37 | 19.6 |
| TraesCS7D01G484400.1 | Wheat | nucleus | 17.42 | 18.55 |
| TraesCS6D01G140900.1 | Wheat | mitochondrion | 16.67 | 18.13 |
| TraesCS5D01G170700.1 | Wheat | nucleus | 14.14 | 17.23 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G220300.1 | EnsemblPlantsGene:TraesCS7D01G220300 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:CCT_domain | InterPro:IPR000315 | InterPro:IPR010402 |
| InterPro:Znf_B-box | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF6 | PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 |
| PFscan:PS51017 | SEG:seg | SMART:SM00336 | TIGR:cd00021 | MapMan:15.5.1.2 | : |
Description
No Description!
Coordinates
chr7D:-:180686124..180691392
Molecular Weight (calculated)
43611.5 Da
IEP (calculated)
4.691
GRAVY (calculated)
-0.614
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MGALCDYCGE HRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC LEENTSLCQN CDWNGHSAGS SAAGHKRQNI NCYSGCPSSA
101: ELSRMWSFIL DIPNVAPELN CEQVISMMSI SDSAVSNGDN AQGDNSLVDM ACATLDEEDK QKSVIGSSSE AALNLLPPAN NQTAVSVDST TAKYTPDKHM
201: FSKDSIYEDF SMDDIDLSYE NYEELFGNSH IQTEELFDDA GIDSYFEPKE ATAVNSDEQP KPKQPAASNA LSADSGMSNP AVKEDDSSLC IPVRQAISYS
301: GFTGESIPEE YQDCGVSPML LMGEPPWLPP GPDGSFAGIR DSAITRYKEK KKRRKFDHKI RYESRKARAD VRKRVKGRFV KAGEAYDYDP LDTRSY
101: ELSRMWSFIL DIPNVAPELN CEQVISMMSI SDSAVSNGDN AQGDNSLVDM ACATLDEEDK QKSVIGSSSE AALNLLPPAN NQTAVSVDST TAKYTPDKHM
201: FSKDSIYEDF SMDDIDLSYE NYEELFGNSH IQTEELFDDA GIDSYFEPKE ATAVNSDEQP KPKQPAASNA LSADSGMSNP AVKEDDSSLC IPVRQAISYS
301: GFTGESIPEE YQDCGVSPML LMGEPPWLPP GPDGSFAGIR DSAITRYKEK KKRRKFDHKI RYESRKARAD VRKRVKGRFV KAGEAYDYDP LDTRSY
001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
Arabidopsis Description
COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.