Factsheet for TraesCS2D01G351900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G372000.1	Wheat	nucleus	99.37	99.37
TraesCS2A01G353900.1	Wheat	nucleus	97.18	98.1
EES12446	Sorghum	nucleus	80.88	78.42
Os04t0497700-01	Rice	nucleus	81.5	78.08
Zm00001d003162_P001	Maize	nucleus	77.74	77.5
Zm00001d025770_P001	Maize	nucleus	78.06	77.09
TraesCS6D01G202000.1	Wheat	nucleus	63.01	63.41
GSMUA_Achr7P16370_001	Banana	nucleus	48.9	53.42
GSMUA_Achr10P...	Banana	nucleus	52.66	52.66
TraesCS6D01G140900.1	Wheat	mitochondrion	43.57	38.19
TraesCS7D01G484400.1	Wheat	nucleus	43.89	37.63
TraesCS7D01G131700.1	Wheat	nucleus	27.59	35.2
TraesCS7D01G213000.2	Wheat	nucleus	39.19	32.64
TraesCS5D01G170700.1	Wheat	nucleus	33.23	32.62
TraesCS6D01G269500.1	Wheat	nucleus	36.05	31.17
TraesCS6D01G267100.1	Wheat	nucleus	25.39	20.66
TraesCS7D01G220300.1	Wheat	nucleus	23.82	19.19
TraesCS2D01G121400.1	Wheat	nucleus	22.26	18.64
TraesCS4D01G167300.1	Wheat	nucleus	21.63	17.38
TraesCS7D01G264300.1	Wheat	nucleus	25.39	16.56

Protein Annotations

EnsemblPlants:TraesCS2D01G351900.1	EnsemblPlantsGene:TraesCS2D01G351900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:CCT_domain	InterPro:IPR000315	InterPro:IPR010402
InterPro:Znf_B-box	PANTHER:PTHR31319	PANTHER:PTHR31319:SF21	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	SEG:seg	SMART:SM00336	TIGR:cd00021	MapMan:15.5.1.2	:

Description

No Description!

Coordinates

chr2D:+:450234865..450235928

Molecular Weight (calculated)

33938.4 Da

IEP (calculated)

5.752

GRAVY (calculated)

-0.356

Length

319 amino acids

Sequence
(BLAST)

001: MEGEEKPVVG GAYWGVGARA CDSCATEAAR LFCRADAAFL CAGCDARAHG AGSRHARVWL CEVCEHAPAA VTCKADAAVL CASCDADIHA ANPLARRHER
101: VPVAPFFGAA ADAHKPFVPS GAQAAAEDDG SNDAEAASWL LPEPDHKDGA NGATADVFFA DSDHYLDLDF ARSMDDIKAI SVQLNGQPEI DLNGGNKGFY
201: SDHSMNHSVS SSEAAVVPDA AAAPVVSRGR EREARLMRYR EKRKSRRFEK TIRYASRKAY AETRPRVKGR FAKRTGTADA DAMEEHEEMY SSAAAAVAAL
301: MAPGPDHDYG VDGVVPTLV

Best Arabidopsis Sequence Match ( AT5G57660.1 )
(BLAST)

001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF

Arabidopsis Description

COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.