Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G326100.1 | |
| TraesCS6B01G356400.1 | |
| TraesCS6D01G305800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24790.1 | TraesCS6A01G326100.1 | AT2G32950.1 | 16339850 |
| AT2G24790.1 | TraesCS6B01G356400.1 | AT2G32950.1 | 16339850 |
| AT2G24790.1 | TraesCS6D01G305800.1 | AT2G32950.1 | 16339850 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G211300.1 | Wheat | nucleus | 98.17 | 97.66 |
| TraesCS7B01G118300.1 | Wheat | nucleus | 95.82 | 95.82 |
| TraesCS6D01G269500.1 | Wheat | nucleus | 56.66 | 58.81 |
| CDY02749 | Canola | nucleus, plastid | 27.68 | 40.93 |
| TraesCS2D01G351900.1 | Wheat | nucleus | 32.64 | 39.19 |
| CDY19821 | Canola | nucleus | 29.77 | 38.78 |
| TraesCS6D01G202000.1 | Wheat | nucleus | 31.59 | 38.17 |
| CDX88145 | Canola | nucleus | 29.24 | 38.1 |
| Bra032061.1-P | Field mustard | nucleus | 28.72 | 38.06 |
| CDY45597 | Canola | nucleus | 28.72 | 38.06 |
| VIT_04s0008g07340.t01 | Wine grape | nucleus, plastid | 34.2 | 37.75 |
| CDY36171 | Canola | nucleus | 28.46 | 37.59 |
| AT2G24790.1 | Thale cress | nucleus, plastid | 27.68 | 36.05 |
| VIT_11s0052g01800.t01 | Wine grape | nucleus, plastid | 33.94 | 36.01 |
| CDX87105 | Canola | nucleus, plastid | 29.77 | 35.96 |
| CDX80476 | Canola | nucleus, plastid | 30.29 | 35.26 |
| KRH18980 | Soybean | nucleus | 32.64 | 34.25 |
| Bra036528.1-P | Field mustard | nucleus | 30.81 | 34.2 |
| Bra009805.1-P | Field mustard | nucleus | 31.33 | 34.19 |
| AT5G24930.1 | Thale cress | nucleus | 32.11 | 33.98 |
| KRH02915 | Soybean | nucleus | 33.16 | 33.96 |
| Bra020425.1-P | Field mustard | nucleus, plastid | 30.29 | 33.92 |
| CDY58843 | Canola | nucleus, plastid | 30.29 | 33.92 |
| CDY25892 | Canola | nucleus | 29.24 | 33.63 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 31.07 | 33.52 |
| TraesCS7D01G131700.1 | Wheat | nucleus | 21.41 | 32.8 |
| TraesCS5D01G170700.1 | Wheat | nucleus | 27.68 | 32.62 |
| CDY49730 | Canola | nucleus | 18.28 | 32.11 |
| Bra002709.1-P | Field mustard | nucleus | 18.28 | 32.11 |
| TraesCS6D01G140900.1 | Wheat | mitochondrion | 29.24 | 30.77 |
| Solyc07g006630.2.1 | Tomato | nucleus | 30.55 | 30.31 |
| PGSC0003DMT400070680 | Potato | nucleus | 30.29 | 30.13 |
| TraesCS7D01G484400.1 | Wheat | nucleus | 27.94 | 28.76 |
| TraesCS6D01G267100.1 | Wheat | nucleus | 20.89 | 20.41 |
| TraesCS7D01G220300.1 | Wheat | nucleus | 19.84 | 19.19 |
| TraesCS4D01G167300.1 | Wheat | nucleus | 16.97 | 16.37 |
| TraesCS2D01G121400.1 | Wheat | nucleus | 15.93 | 16.01 |
| TraesCS7D01G264300.1 | Wheat | nucleus | 19.06 | 14.93 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G213000.2 | EnsemblPlantsGene:TraesCS7D01G213000 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:CCT_domain | InterPro:IPR000315 | InterPro:IPR010402 |
| InterPro:Znf_B-box | ncoils:Coil | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF38 | PFAM:PF06203 | PFscan:PS50119 |
| PFscan:PS51017 | SEG:seg | SMART:SM00336 | TIGR:cd00021 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr7D:+:171312196..171314225
Molecular Weight (calculated)
42214.0 Da
IEP (calculated)
6.668
GRAVY (calculated)
-0.451
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MNCVSNGTVY EEAVGREGSW ARLCDGCCTV PSVVYCRADS AYLCASCDAQ IHAANRVASR HERVLLSEAY KHAPVVLECH ADAAALCAAY EAQVHYANLL
101: ATMHQRVPVV SHPVAAIPAA SLFAEAAATA PVLGSKEEDA SWLLLSKDSD NHNHSGNHSS SSSSSRYFGE VDQYFDLVGY NSYYDSHMNN QEQYVMQEQQ
201: HLQQMQKEYA EQQMQKEYVE KEGSECIVPS QSAIVSRPHQ SGYAPLVRAE QAASVTAGVS AYTDSVNNSI SFSMEAGIVP DNTVQSSILR PAGAIGHFSS
301: PSLQTPLHFS SKEREARVLR YKEKKKSRKF EKTTRYATRK AYAEARPRIK GRFAKRSDAD MEVDQTFSTA ALSDSSYSTV PWF
101: ATMHQRVPVV SHPVAAIPAA SLFAEAAATA PVLGSKEEDA SWLLLSKDSD NHNHSGNHSS SSSSSRYFGE VDQYFDLVGY NSYYDSHMNN QEQYVMQEQQ
201: HLQQMQKEYA EQQMQKEYVE KEGSECIVPS QSAIVSRPHQ SGYAPLVRAE QAASVTAGVS AYTDSVNNSI SFSMEAGIVP DNTVQSSILR PAGAIGHFSS
301: PSLQTPLHFS SKEREARVLR YKEKKKSRKF EKTTRYATRK AYAEARPRIK GRFAKRSDAD MEVDQTFSTA ALSDSSYSTV PWF
001: MLKVESNWAQ ACDTCRSAAC TVYCRADSAY LCSSCDAQVH AANRLASRHE RVRVCQSCER APAAFFCKAD AASLCTTCDS EIHSANPLAR RHQRVPILPI
101: SEYSYSSTAT NHSCETTVTD PENRLVLGQE EEDEDEAEAA SWLLPNSGKN SGNNNGFSIG DEFLNLVDYS SSDKQFTDQS NQYQLDCNVP QRSYGEDGVV
201: PLQIEVSKGM YQEQQNFQLS INCGSWGALR SSNGSLSHMV NVSSMDLGVV PESTTSDATV SNPRSPKAVT DQPPYPPAQM LSPRDREARV LRYREKKKMR
301: KFEKTIRYAS RKAYAEKRPR IKGRFAKKKD VDEEANQAFS TMITFDTGYG IVPSF
101: SEYSYSSTAT NHSCETTVTD PENRLVLGQE EEDEDEAEAA SWLLPNSGKN SGNNNGFSIG DEFLNLVDYS SSDKQFTDQS NQYQLDCNVP QRSYGEDGVV
201: PLQIEVSKGM YQEQQNFQLS INCGSWGALR SSNGSLSHMV NVSSMDLGVV PESTTSDATV SNPRSPKAVT DQPPYPPAQM LSPRDREARV LRYREKKKMR
301: KFEKTIRYAS RKAYAEKRPR IKGRFAKKKD VDEEANQAFS TMITFDTGYG IVPSF
Arabidopsis Description
COL1Zinc finger protein CONSTANS-LIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:O50055]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.