Factsheet for TraesCS6D01G202000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G218900.1	Wheat	nucleus	97.48	96.26
TraesCS6B01G248400.1	Wheat	nucleus	97.16	95.95
HORVU6Hr1G056000.2	Barley	nucleus	94.01	93.71
Os02t0610500-01	Rice	nucleus	76.97	73.49
EES05406	Sorghum	nucleus	73.5	69.35
Zm00001d017176_P001	Maize	nucleus	71.61	67.76
Zm00001d051047_P001	Maize	nucleus	66.88	67.52
TraesCS2D01G351900.1	Wheat	nucleus	63.41	63.01
GSMUA_Achr7P16370_001	Banana	nucleus	48.58	52.74
GSMUA_Achr10P...	Banana	nucleus	53.0	52.66
TraesCS7D01G131700.1	Wheat	nucleus	30.6	38.8
TraesCS6D01G140900.1	Wheat	mitochondrion	44.16	38.46
TraesCS7D01G484400.1	Wheat	nucleus	42.59	36.29
TraesCS5D01G170700.1	Wheat	nucleus	33.75	32.92
TraesCS6D01G269500.1	Wheat	nucleus	38.17	32.79
TraesCS7D01G213000.2	Wheat	nucleus	38.17	31.59
TraesCS6D01G267100.1	Wheat	nucleus	26.5	21.43
TraesCS2D01G121400.1	Wheat	nucleus	23.97	19.95
TraesCS7D01G220300.1	Wheat	nucleus	23.97	19.19
TraesCS4D01G167300.1	Wheat	nucleus	22.4	17.88
TraesCS7D01G264300.1	Wheat	nucleus	23.66	15.34

Protein Annotations

EnsemblPlants:TraesCS6D01G202000.1	EnsemblPlantsGene:TraesCS6D01G202000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:CCT_domain	InterPro:IPR000315	InterPro:IPR010402
InterPro:Znf_B-box	PANTHER:PTHR31319	PANTHER:PTHR31319:SF21	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	SEG:seg	SMART:SM00336	TIGR:cd00021	MapMan:15.5.1.2	:

Description

No Description!

Coordinates

chr6D:+:284849813..284850866

Molecular Weight (calculated)

33353.7 Da

IEP (calculated)

4.984

GRAVY (calculated)

-0.353

Length

317 amino acids

Sequence
(BLAST)

001: MKVEEQTVVG GGGGGLWGLA GRPCDTCAVD AARLYCRSDG AYLCAGCDAR AHGAGSRHAR VWLCEVCEHA PAAVTCRADA AALCATCDAD IHSANPLASR
101: HERLPVTPFF GALADPPQPA PSPSSAAATQ EDADDDGSNE AEAASWLLPE PGDSPEDSTA TFFPDSDAYL DLDFVRSMDG IKAIGVPVAP SELDVAGGAL
201: FYPEHSMNQT SEVAVVPDAL SAGGAPAPAP SVAVVASKGK EREARLMRYR EKRKNRRFQK TIRYASRKAY AETRPRIKGR FAKRTAEDDA LERDGPFSPA
301: SSAHLASDGD YGVVPSF

Best Arabidopsis Sequence Match ( AT5G24930.1 )
(BLAST)

001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF

Arabidopsis Description

COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.