Factsheet for TraesCS7D01G484400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G400600.1	Wheat	nucleus	97.31	97.31
TraesCS7A01G497200.1	Wheat	nucleus	95.97	95.97
Os02t0178100-01	Rice	nucleus	51.61	58.01
TraesCS6D01G140900.1	Wheat	mitochondrion	55.65	56.87
Zm00001d015468_P001	Maize	mitochondrion	55.65	55.5
OQU84486	Sorghum	nucleus	57.53	54.87
TraesCS2D01G351900.1	Wheat	nucleus	37.63	43.89
TraesCS6D01G202000.1	Wheat	nucleus	36.29	42.59
TraesCS7D01G131700.1	Wheat	nucleus	23.92	35.6
TraesCS6D01G269500.1	Wheat	nucleus	30.11	30.35
TraesCS5D01G170700.1	Wheat	nucleus	26.34	30.15
TraesCS7D01G213000.2	Wheat	nucleus	28.76	27.94
TraesCS6D01G267100.1	Wheat	nucleus	20.97	19.9
TraesCS7D01G220300.1	Wheat	nucleus	18.55	17.42
TraesCS2D01G121400.1	Wheat	nucleus	17.47	17.06
TraesCS7D01G264300.1	Wheat	nucleus	20.43	15.54
TraesCS4D01G167300.1	Wheat	nucleus	15.59	14.61

Protein Annotations

MapMan:35.1	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	PFAM:PF00643
PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF3	SMART:SM00336
SUPFAM:SSF57903	EnsemblPlantsGene:TraesCS7D01G484400	EnsemblPlants:TraesCS7D01G484400.1	InterPro:Znf_B-box	InterPro:Znf_FYVE_PHD	TIGR:cd00021
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:594729617..594730835

Molecular Weight (calculated)

39529.6 Da

IEP (calculated)

6.231

GRAVY (calculated)

-0.201

Length

372 amino acids

Sequence
(BLAST)

001: MMELRKYWGV GGRRCGACEG AAPAAVHCRD CAGYLCTGCD ARPAHARAGH ERVWVCEVCE VSPAAVTCKA DAAVLCAACD AEIHHANPLA ERHVRVPIAP
101: IGSPEAAAVA AEAMMFCVAG DGEARADQDE VPEQLHQHGG MLNLNVEAGK EGGKMDYLFS DLVDPYLAVD FTRFAHADSV VPSGVATVAV PAVVDLDFAC
201: GIGAKPPQTY SSSYTANASG AHSGSSSEVG VVPEAICGGA GSFEIDFTRP KPQAYMPAYT AAPPSHGVTM QQASPVDMGY LTVPERPVAV TGEGRVARLM
301: RYREKRKNRR FEKTIRYASR KAYAESRPRV KGRFAKRTDQ DADGEDLDAE AHAVPSSTSY LLDFGYGVVP SF

Best Arabidopsis Sequence Match ( AT2G24790.1 )
(BLAST)

001: MASSSRLCDS CKSTAATLFC RADAAFLCGD CDGKIHTANK LASRHERVWL CEVCEQAPAH VTCKADAAAL CVTCDRDIHS ANPLSRRHER VPITPFYDAV
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF

Arabidopsis Description

COL3Zinc finger protein CONSTANS-LIKE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK53]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.