CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015468_P001	Maize	mitochondrion	81.79	85.52
Os02t0178100-01	Rice	nucleus	62.82	74.02
EER90145	Sorghum	nucleus	58.97	61.17
TraesCS7B01G400600.1	Wheat	nucleus	55.64	58.33
TraesCS7D01G484400.1	Wheat	nucleus	54.87	57.53
TraesCS7A01G497200.1	Wheat	nucleus	54.36	56.99
EES05406	Sorghum	nucleus	39.49	45.83
EES12446	Sorghum	nucleus	38.46	45.59
EES14798	Sorghum	nucleus	25.13	33.56
EER88227	Sorghum	nucleus	33.33	31.63
OQU85473	Sorghum	nucleus	26.41	28.14
EES07342	Sorghum	nucleus	18.72	17.98
KXG19836	Sorghum	nucleus	18.46	17.52
EES14176	Sorghum	nucleus	20.0	15.92
EER99873	Sorghum	nucleus	16.41	15.5
EER94860	Sorghum	nucleus	15.38	14.53

Protein Annotations

MapMan:35.2	UniProt:A0A1Z5RM83	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315
InterPro:IPR010402	EnsemblPlants:OQU84486	ProteinID:OQU84486	ProteinID:OQU84486.1	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF36	SMART:SM00336	EnsemblPlantsGene:SORBI_3004G063200
UniParc:UPI000B4238D0	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:5083505..5085664

Molecular Weight (calculated)

40078.6 Da

IEP (calculated)

6.105

GRAVY (calculated)

-0.184

Length

390 amino acids

Sequence
(BLAST)

001: MEALVAGRYW GVGGRRCEAC GGSPAAVHCR TCPGGGAYLC AGCDAGHARA GHERVWVCEV CERAPAAVTC RADAAALCAA CDADIHDANP LARRHERVPV
101: QPIGAAAAAP AAETLLFGAA AEENQDDDDG AAAAAKVVGV DAGKLADFLF ADVMDPFFGQ DFTGGTRFPH ADSVVPNKGS CGGGGAVDLD FGGGVAAAAV
201: AAKPSYSSYT AASLGHSGSS SEVGLVPDAM CGRGGSVTGG VIELDFAQSK AAYLPYAATP THSMSSLDVG AVPERGDGVM AGRVATPPAA AAAESREARL
301: MRYREKRKNR RFEKTIRYAS RKAYAESRPR IKGRFAKRAD DNDADADADF DFDAGAAAAT APARSRSQQQ QPSYPYVLDF AAGYGVVPTF

Best Arabidopsis Sequence Match ( AT2G24790.1 )
(BLAST)

001: MASSSRLCDS CKSTAATLFC RADAAFLCGD CDGKIHTANK LASRHERVWL CEVCEQAPAH VTCKADAAAL CVTCDRDIHS ANPLSRRHER VPITPFYDAV
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF

Arabidopsis Description

COL3Zinc finger protein CONSTANS-LIKE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK53]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.