CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007107_P001	Maize	nucleus	74.82	75.55
Os07t0667300-01	Rice	nucleus	54.24	58.95
EER94860	Sorghum	nucleus	47.22	47.22
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	7.99	37.08
AT2G47890.1	Thale cress	nucleus	26.15	32.53
Solyc09g074560.2.1	Tomato	nucleus	29.06	32.17
KRG96381	Soybean	nucleus	27.12	31.91
PGSC0003DMT400029591	Potato	nucleus	29.06	31.66
KRH68113	Soybean	nucleus	26.63	31.52
KRH31920	Soybean	nucleus	26.39	31.32
HORVU2Hr1G020760.2	Barley	cytosol, mitochondrion	30.02	31.23
CDX80141	Canola	nucleus	24.7	30.72
CDY53026	Canola	nucleus	24.7	30.54
Bra004423.1-P	Field mustard	nucleus	24.7	30.54
KRH71535	Soybean	nucleus	24.94	30.29
VIT_07s0104g01360.t01	Wine grape	nucleus	28.09	29.44
EES14176	Sorghum	nucleus	26.88	22.65
EES07342	Sorghum	nucleus	21.07	21.43
EES12446	Sorghum	nucleus	16.95	21.28
KXG19836	Sorghum	nucleus	20.58	20.68
EES05406	Sorghum	nucleus	16.46	20.24
EER90145	Sorghum	nucleus	16.46	18.09
OQU85473	Sorghum	nucleus	15.98	18.03
EES14798	Sorghum	nucleus	12.35	17.47
OQU84486	Sorghum	nucleus	15.5	16.41
EER88227	Sorghum	nucleus	16.22	16.3

Protein Annotations

MapMan:15.5.1.2	EntrezGene:8074410	UniProt:C5X4V2	InterPro:CCT_domain	EnsemblPlants:EER99873	ProteinID:EER99873
ProteinID:EER99873.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF16	SMART:SM00336	EnsemblPlantsGene:SORBI_3002G408500
UniParc:UPI0001A8476E	RefSeq:XP_002463352.1	InterPro:Znf_B-box	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:75739001..75744430

Molecular Weight (calculated)

43043.1 Da

IEP (calculated)

4.759

GRAVY (calculated)

-0.298

Length

413 amino acids

Sequence
(BLAST)

001: MSSAAADAAS GKEAPACESC TSLPAVVYCR ADSARLCLPC DRHVHGANAV STRHVRAPLC SGCRATATVT AGGGTFLCAN CHFGSEEEEG RHRDGDDPQP
101: LHHDRAAVEG YVGCPSIAEL AAILGVAGYD EKAAAAGNGG WWPASAWEDP QVLRLEDVIV PTTSCHGLQP LLTPPSPENR SSGGEMADEV VRQLGELAKL
201: EATVAAAYAE MEPADGEQLP PWASPELAIG HADFGALDAG AAWHDAATIA AVPSTEEQEA WIAAGCDVDA AGRTDEEARE HAALAPAPAE PCLSSFVEMS
301: EICPGSVVTL SHGGVGGGGT ADVDNSGKTD AETAPRPQLA PTAPVLVAVP VPVTEKMGGY DVAYPDRGTV ISRYKEKRKN RRFDKQIRYE SRKARADGRM
401: RIKGRFAKSG GEV

Best Arabidopsis Sequence Match ( AT5G48250.1 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CNAQPASVRC SDERVSLCQN CDWSGHDGKN STTTSHHKRQ TINCYSGCPS
101: SAELSSIWSF CMDLNISSAE ESACEQGMGL MTIDEDGTGE KSGVQKINVE QPETSSAAQG MDHSSVPENS SMAKELGVCE DDFNGNLISD EVDLALENYE
201: ELFGSAFNSS RYLFEHGGIG SLFEKDEAHE GSMQQPALSN NASADSFMTC RTEPIICYSS KPAHSNISFS GITGESNAGD FQDCGASSMK QLSREPQPWC
301: HPTAQDIIAS SHATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR VKGRFVKSGE AYDYDPMSPT RSY

Arabidopsis Description

COL10Zinc finger protein CONSTANS-LIKE 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.