Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80141 | Canola | nucleus | 96.41 | 96.99 |
| AT2G47890.1 | Thale cress | nucleus | 69.46 | 69.88 |
| KRH68113 | Soybean | nucleus | 46.41 | 44.41 |
| KRG96381 | Soybean | nucleus | 46.41 | 44.16 |
| Solyc09g074560.2.1 | Tomato | nucleus | 47.6 | 42.63 |
| KRH71535 | Soybean | nucleus | 43.11 | 42.35 |
| VIT_07s0104g01360.t01 | Wine grape | nucleus | 49.7 | 42.13 |
| PGSC0003DMT400029591 | Potato | nucleus | 47.6 | 41.95 |
| KRH31920 | Soybean | nucleus | 43.41 | 41.67 |
| GSMUA_Achr6P13590_001 | Banana | cytosol, mitochondrion, nucleus | 9.58 | 35.96 |
| CDY15696 | Canola | nucleus | 30.54 | 35.29 |
| CDY30385 | Canola | nucleus | 34.13 | 29.46 |
| CDY68819 | Canola | nucleus | 33.83 | 29.2 |
| CDY69474 | Canola | nucleus, plastid | 8.38 | 29.17 |
| CDY66639 | Canola | nucleus | 33.83 | 28.04 |
| CDY11755 | Canola | nucleus | 32.63 | 27.74 |
| GSMUA_Achr3P08880_001 | Banana | nucleus | 33.53 | 27.45 |
| Os07t0667300-01 | Rice | nucleus | 31.14 | 27.37 |
| Zm00001d029149_P001 | Maize | nucleus | 31.14 | 26.2 |
| CDX90119 | Canola | nucleus | 32.63 | 26.01 |
| CDY45597 | Canola | nucleus | 22.46 | 25.95 |
| EER94860 | Sorghum | nucleus | 32.04 | 25.91 |
| CDY36171 | Canola | nucleus | 22.46 | 25.86 |
| Os03t0351100-01 | Rice | nucleus | 31.14 | 25.81 |
| TraesCS2D01G121400.1 | Wheat | nucleus | 29.34 | 25.72 |
| TraesCS2B01G140300.1 | Wheat | nucleus | 29.34 | 25.32 |
| Zm00001d007107_P001 | Maize | nucleus | 30.84 | 25.18 |
| TraesCS2A01G119600.1 | Wheat | nucleus | 28.74 | 25.13 |
| CDY02749 | Canola | nucleus, plastid | 19.46 | 25.1 |
| EER99873 | Sorghum | nucleus | 30.54 | 24.7 |
| TraesCS4D01G167300.1 | Wheat | nucleus | 29.34 | 24.69 |
| CDY19821 | Canola | nucleus | 21.56 | 24.49 |
| TraesCS4B01G155800.1 | Wheat | nucleus | 29.04 | 24.43 |
| TraesCS4A01G140600.1 | Wheat | nucleus | 29.64 | 24.03 |
| CDX88145 | Canola | nucleus | 20.96 | 23.81 |
| CDY71884 | Canola | nucleus | 20.96 | 23.73 |
| CDY26470 | Canola | nucleus | 23.35 | 23.42 |
| CDX85529 | Canola | nucleus | 22.16 | 23.34 |
| CDY71818 | Canola | nucleus | 20.66 | 23.31 |
| CDX69493 | Canola | nucleus | 23.05 | 22.85 |
| CDY05691 | Canola | nucleus | 23.65 | 22.77 |
| CDX87105 | Canola | nucleus, plastid | 21.56 | 22.71 |
| CDX90969 | Canola | nucleus | 21.56 | 22.43 |
| CDY48743 | Canola | nucleus | 23.05 | 22.0 |
| CDY07979 | Canola | nucleus | 22.75 | 21.59 |
| CDX80476 | Canola | nucleus, plastid | 21.26 | 21.58 |
| CDX85321 | Canola | nucleus | 22.75 | 21.17 |
| CDY26469 | Canola | nucleus | 23.05 | 21.04 |
| Zm00001d022500_P001 | Maize | nucleus | 11.38 | 20.99 |
| CDX69494 | Canola | nucleus | 23.05 | 20.92 |
| HORVU4Hr1G048700.1 | Barley | nucleus, plastid | 29.04 | 20.82 |
| CDX86318 | Canola | nucleus | 22.16 | 20.67 |
| CDY58843 | Canola | nucleus, plastid | 20.96 | 20.47 |
| CDY22125 | Canola | nucleus | 22.16 | 20.22 |
| CDY64255 | Canola | nucleus | 22.46 | 20.22 |
| CDY35952 | Canola | nucleus | 22.16 | 20.05 |
| CDY55657 | Canola | nucleus | 23.05 | 19.95 |
| CDY25892 | Canola | nucleus | 19.76 | 19.82 |
| CDY28029 | Canola | nucleus | 21.86 | 19.62 |
| CDX74034 | Canola | nucleus | 22.16 | 18.97 |
| CDY48428 | Canola | nucleus | 15.27 | 18.89 |
| CDY04213 | Canola | nucleus | 18.86 | 18.75 |
| CDX74261 | Canola | nucleus | 11.98 | 17.54 |
| CDX91989 | Canola | nucleus | 11.38 | 16.67 |
| CDY49730 | Canola | nucleus | 9.88 | 15.14 |
| HORVU2Hr1G020760.2 | Barley | cytosol, mitochondrion | 17.66 | 14.86 |
| CDY07393 | Canola | nucleus | 19.16 | 11.94 |
Protein Annotations
| MapMan:15.5.1.2 | GO:A0A078ITC7 | UniProt:A0A078ITC7 | InterPro:CCT_domain | EnsemblPlants:CDY53026 | ProteinID:CDY53026 |
| ProteinID:CDY53026.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00008346001 | InterPro:IPR000315 | InterPro:IPR010402 |
| PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF16 | SMART:SM00336 |
| UniParc:UPI0004EEC5A8 | InterPro:Znf_B-box | SEG:seg | : | : | : |
Description
BnaC04g00040DBnaC04g00040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITC7]
Coordinates
chrLK033154:+:68579..70416
Molecular Weight (calculated)
37930.9 Da
IEP (calculated)
6.270
GRAVY (calculated)
-0.804
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKEEEEEGS HHRICDYCES SVALVYCKAD SAKLCLACDN QVHVTNQLFS KHFRSLLCDS CDDSPSSVFC DTESSVLCQN CDWQHHTSSS SLHSRRPLEG
101: FSGCPSVTEL LALVGLDDLS DKALFLPHPR GGSEQTPPQI VSLNDLVASD GSSHNYRAMD VPPLPKNRHA TCGRHKEEMI RQLRELSRSE PSCLKYETLD
201: AELDTTGFLF LEPGNDDYLF SSTFESQVGG LKWFEDQQED YYPYSDDNNV NQRGCSTQQQ QQQESSPVMV PVSTSTTTTR LTHEINSLER NSALSRYKAK
301: KKSRRYEKHI RYESRKVRAE SRTRIRGRFA KSHP
101: FSGCPSVTEL LALVGLDDLS DKALFLPHPR GGSEQTPPQI VSLNDLVASD GSSHNYRAMD VPPLPKNRHA TCGRHKEEMI RQLRELSRSE PSCLKYETLD
201: AELDTTGFLF LEPGNDDYLF SSTFESQVGG LKWFEDQQED YYPYSDDNNV NQRGCSTQQQ QQQESSPVMV PVSTSTTTTR LTHEINSLER NSALSRYKAK
301: KKSRRYEKHI RYESRKVRAE SRTRIRGRFA KSHP
001: MEAEEGHQRD RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVANQLFAKH FRSLLCDSCN ESPSSLFCET ERSVLCQNCD WQHHTASSSL HSRRPFEGFT
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
Arabidopsis Description
COL13Zinc finger protein CONSTANS-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:O82256]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.