Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER94860 | Sorghum | nucleus | 90.43 | 86.92 |
| Os03t0351100-01 | Rice | nucleus | 64.74 | 63.77 |
| TraesCS4B01G155800.1 | Wheat | nucleus | 61.21 | 61.21 |
| TraesCS4D01G167300.1 | Wheat | nucleus | 60.45 | 60.45 |
| TraesCS4A01G140600.1 | Wheat | nucleus | 61.21 | 58.98 |
| HORVU4Hr1G048700.1 | Barley | nucleus, plastid | 62.22 | 53.0 |
| Zm00001d007107_P001 | Maize | nucleus | 45.09 | 43.77 |
| Zm00001d022500_P001 | Maize | nucleus | 17.88 | 39.23 |
| KRH31920 | Soybean | nucleus | 28.21 | 32.18 |
| KRH68113 | Soybean | nucleus | 28.21 | 32.09 |
| KRG96381 | Soybean | nucleus | 27.96 | 31.62 |
| KRH71535 | Soybean | nucleus | 26.95 | 31.47 |
| Bra004423.1-P | Field mustard | nucleus | 26.2 | 31.14 |
| CDY53026 | Canola | nucleus | 26.2 | 31.14 |
| CDX80141 | Canola | nucleus | 25.94 | 31.02 |
| AT2G47890.1 | Thale cress | nucleus | 25.69 | 30.72 |
| VIT_07s0104g01360.t01 | Wine grape | nucleus | 29.97 | 30.2 |
| PGSC0003DMT400029591 | Potato | nucleus | 28.72 | 30.08 |
| Solyc09g074560.2.1 | Tomato | nucleus | 27.46 | 29.22 |
| Zm00001d025770_P001 | Maize | nucleus | 18.14 | 22.29 |
| Zm00001d003162_P001 | Maize | nucleus | 17.88 | 22.19 |
| Zm00001d051047_P001 | Maize | nucleus | 17.38 | 21.97 |
| Zm00001d017176_P001 | Maize | nucleus | 17.38 | 20.6 |
| Zm00001d051684_P007 | Maize | nucleus | 20.65 | 20.2 |
| Zm00001d031662_P001 | Maize | nucleus | 24.69 | 20.04 |
| Zm00001d045804_P003 | Maize | nucleus | 20.91 | 19.04 |
| Zm00001d015468_P001 | Maize | mitochondrion | 15.62 | 16.62 |
| Zm00001d046925_P001 | Maize | nucleus | 14.86 | 16.21 |
| Zm00001d024200_P001 | Maize | nucleus | 11.34 | 16.19 |
| Zm00001d045735_P002 | Maize | extracellular, vacuole | 16.88 | 15.65 |
| Zm00001d049347_P001 | Maize | nucleus | 10.58 | 15.05 |
| Zm00001d017885_P001 | Maize | nucleus | 17.13 | 14.75 |
Protein Annotations
| EntrezGene:100383648 | MapMan:35.1 | EMBL:BT067952 | UniProt:C0PI33 | InterPro:CCT_domain | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0008270 | EMBL:HQ858666 | InterPro:IPR000315 | InterPro:IPR010402 | ProteinID:ONL98070.1 | PFAM:PF06203 |
| PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF10 | SMART:SM00336 | UniParc:UPI000195CCEA |
| EnsemblPlantsGene:Zm00001d029149 | EnsemblPlants:Zm00001d029149_P001 | EnsemblPlants:Zm00001d029149_T001 | InterPro:Znf_B-box | SEG:seg | : |
Description
Zinc finger protein CONSTANS-LIKE 13
Coordinates
chr1:+:60531179..60535397
Molecular Weight (calculated)
42769.5 Da
IEP (calculated)
5.106
GRAVY (calculated)
-0.674
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEGDDDRRD ELLGAGRDHE PEPADAEEAK KPAPGEAEAG NGAGAEAATC DYCGTAAAAV YCRADSARLC LPCDRLVHGA NGVCSRHARA PLCAGCCAAG
101: AVFRRASTSA FLCSNCDFGR HRDGGDPPLH DRCAVQPYSG CPPASDLAAL LAVPLFDKPA AEDGAWWNIW EEPQVLSLED LIVPTTPCHG FEPLLTPPSP
201: KNRSISPDRK VNEEILRQLG ELAESDGGMQ ASAGREEAEQ AGGDQFPSWA SPQYATGHGN FGTEDNHENG RWNNSEYHDL NDACKLEVTY DQAPVNSAEP
301: CLSSFAPLSE ICPSMSNGSS KEDNHQANPG IGMPMQGLPK RSGFDVVPCP DRDSVISRYK AKRKTRRFDR QVRYESRKVR ADGRLRIKGR FAKANQT
101: AVFRRASTSA FLCSNCDFGR HRDGGDPPLH DRCAVQPYSG CPPASDLAAL LAVPLFDKPA AEDGAWWNIW EEPQVLSLED LIVPTTPCHG FEPLLTPPSP
201: KNRSISPDRK VNEEILRQLG ELAESDGGMQ ASAGREEAEQ AGGDQFPSWA SPQYATGHGN FGTEDNHENG RWNNSEYHDL NDACKLEVTY DQAPVNSAEP
301: CLSSFAPLSE ICPSMSNGSS KEDNHQANPG IGMPMQGLPK RSGFDVVPCP DRDSVISRYK AKRKTRRFDR QVRYESRKVR ADGRLRIKGR FAKANQT
001: MEAEEGHQRD RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVANQLFAKH FRSLLCDSCN ESPSSLFCET ERSVLCQNCD WQHHTASSSL HSRRPFEGFT
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
Arabidopsis Description
COL13Zinc finger protein CONSTANS-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:O82256]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.