Factsheet for Zm00001d017885_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012821_P003
Zm00001d014423_P002
Zm00001d030110_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	Zm00001d012821_P003	AT1G32230.1	19548978
AT5G48250.1	Zm00001d014423_P002	AT1G32230.1	19548978
AT5G48250.1	Zm00001d030110_P001	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07342	Sorghum	nucleus	75.27	85.47
Zm00001d051684_P007	Maize	nucleus	73.1	83.0
Os02t0724000-01	Rice	nucleus	61.82	70.02
HORVU6Hr1G071950.2	Barley	nucleus	54.88	66.23
TraesCS6B01G315400.1	Wheat	nucleus	55.31	65.38
TraesCS6A01G286400.3	Wheat	nucleus	55.1	65.13
TraesCS6D01G267100.1	Wheat	nucleus	54.88	64.54
Zm00001d045804_P003	Maize	nucleus	59.87	63.3
GSMUA_Achr7P20150_001	Banana	nucleus	49.46	55.34
GSMUA_Achr10P...	Banana	nucleus	45.77	52.62
GSMUA_Achr5P22460_001	Banana	nucleus	41.0	48.34
VIT_00s0194g00070.t01	Wine grape	nucleus	43.17	48.07
KRG89998	Soybean	nucleus	41.87	47.19
KRH72628	Soybean	nucleus	41.21	46.91
VIT_12s0057g01350.t01	Wine grape	nucleus	42.08	46.75
KRH17709	Soybean	nucleus	41.21	46.45
CDY35952	Canola	nucleus	37.09	46.34
AT3G07650.1	Thale cress	nucleus	37.31	46.24
KRH16989	Soybean	nucleus	41.21	46.23
Bra040020.1-P	Field mustard	nucleus	36.66	46.17
Bra001264.1-P	Field mustard	nucleus	35.14	46.15
CDY07979	Canola	nucleus	35.14	46.02
CDY28029	Canola	nucleus	36.88	45.7
CDY22125	Canola	nucleus	36.23	45.63
AT5G48250.1	Thale cress	nucleus	36.66	45.31
CDX85321	Canola	nucleus	34.92	44.85
Bra037499.1-P	Field mustard	nucleus	33.41	44.64
PGSC0003DMT400074143	Potato	nucleus	39.48	44.61
CDY48743	Canola	nucleus	33.84	44.57
CDY05691	Canola	nucleus	33.41	44.38
Bra020709.1-P	Field mustard	nucleus	33.62	44.16
Bra029666.1-P	Field mustard	nucleus	36.88	44.04
CDX86318	Canola	nucleus	34.06	43.85
CDX74034	Canola	nucleus	35.36	41.79
PGSC0003DMT400013624	Potato	nucleus	37.09	41.4
Solyc05g020020.2.1	Tomato	nucleus	36.66	41.22
Solyc07g045180.2.1	Tomato	nucleus	36.66	40.43
PGSC0003DMT400044878	Potato	nucleus	36.01	40.39
Solyc12g006240.1.1	Tomato	nucleus	20.82	35.69
Zm00001d025770_P001	Maize	nucleus	14.97	21.36
Zm00001d003162_P001	Maize	nucleus	14.75	21.25
Zm00001d051047_P001	Maize	nucleus	14.1	20.7
Zm00001d017176_P001	Maize	nucleus	14.97	20.6
Zm00001d022500_P001	Maize	nucleus	7.81	19.89
Zm00001d024200_P001	Maize	nucleus	11.28	18.7
Zm00001d049347_P001	Maize	nucleus	11.28	18.64
Zm00001d007107_P001	Maize	nucleus	15.4	17.36
Zm00001d029149_P001	Maize	nucleus	14.75	17.13
Zm00001d046925_P001	Maize	nucleus	13.23	16.76
Zm00001d015468_P001	Maize	mitochondrion	13.45	16.62
Zm00001d045735_P002	Maize	extracellular, vacuole	14.75	15.89
Zm00001d031662_P001	Maize	nucleus	16.27	15.34

Protein Annotations

EntrezGene:100304421	MapMan:35.1	UniProt:A0A1D6HIW9	ProteinID:AQK74439.1	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF6	SMART:SM00336	UniParc:UPI0008439D4F	EnsemblPlantsGene:Zm00001d017885
EnsemblPlants:Zm00001d017885_P001	EnsemblPlants:Zm00001d017885_T001	InterPro:Znf_B-box	SEG:seg	:	:

Description

C2C2-CO-like-transcription factor 5Zinc finger protein CONSTANS-LIKE 9

Coordinates

chr5:+:209614260..209620254

Molecular Weight (calculated)

51027.8 Da

IEP (calculated)

5.237

GRAVY (calculated)

-0.484

Length

461 amino acids

Sequence
(BLAST)

001: MEVKYRIGFH WIQLLSRVLE GGFDTSSEQP VEFLKYCPGS WLLSVISVGN KANALSRRHT RTLLCDRCGS QPASVRCLED NASLCQNCDW NGHDAESGAS
101: GHKRQAINCY SGCPSSAELS RIWSFITDIP TVAAEPDYED GLSMMTIDGS DVTNRHDTSD DKRLLEIANT TLMSDPPSAD KLKSPTGSSS GDGFDVMTLA
201: TDQPAGPVSA TPKVPNARDD DKFNDGMYED LCVDDADLTF EDYEELFGTS HIRTEELFDD AGIDGYFELK ETPPFYFNEV CYLTLSMHTT VISGWPKRIF
301: SFEFFLWQRE LLCLLLQPKA MQIECGNVVS ADCAMSNPGA RADSSLCIPV RQVRSSISHS LSGLTGESSA GDHHDCGVSP MLLMGEPPWH SPGGPEGSVA
401: GGSRDSALTR YKEKKKRRKF DKKIRYASRK ARADVRKRVK GRFIKAGEAY DYDPLSQTRS Y

Best Arabidopsis Sequence Match ( AT3G07650.1 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY

Arabidopsis Description

COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.