Factsheet for TraesCS6B01G315400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT5G48250.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT5G48250.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT5G48250.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT5G48250.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT5G48250.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G071950.2	Barley	nucleus	92.82	94.76
TraesCS6D01G267100.1	Wheat	nucleus	91.03	90.56
TraesCS6A01G286400.3	Wheat	nucleus	89.74	89.74
Os02t0724000-01	Rice	nucleus	76.67	73.46
EES07342	Sorghum	nucleus	73.08	70.2
Zm00001d051684_P007	Maize	nucleus	71.54	68.72
TraesCS7B01G125500.1	Wheat	cytosol, nucleus, plastid	53.85	62.31
GSMUA_Achr7P20150_001	Banana	nucleus	58.46	55.34
Zm00001d017885_P001	Maize	nucleus	65.38	55.31
GSMUA_Achr10P...	Banana	nucleus	54.62	53.12
Bra001264.1-P	Field mustard	nucleus	47.44	52.71
CDY07979	Canola	nucleus	47.44	52.56
VIT_12s0057g01350.t01	Wine grape	nucleus	55.64	52.29
VIT_00s0194g00070.t01	Wine grape	nucleus	55.38	52.17
CDY35952	Canola	nucleus	48.72	51.49
AT3G07650.1	Thale cress	nucleus	48.72	51.08
Bra040020.1-P	Field mustard	nucleus	47.44	50.55
CDY28029	Canola	nucleus	48.21	50.54
KRG89998	Soybean	nucleus	52.56	50.12
CDY22125	Canola	nucleus	46.92	50.0
KRH17709	Soybean	nucleus	51.79	49.39
KRH72628	Soybean	nucleus	51.28	49.38
CDX85321	Canola	nucleus	45.38	49.3
Bra029666.1-P	Field mustard	nucleus	48.72	49.22
CDY48743	Canola	nucleus	44.1	49.14
Bra020709.1-P	Field mustard	nucleus	43.85	48.72
AT5G48250.1	Thale cress	nucleus	46.41	48.53
KRH16989	Soybean	nucleus	51.03	48.42
GSMUA_Achr5P22460_001	Banana	nucleus	48.46	48.34
CDX86318	Canola	nucleus	44.36	48.32
PGSC0003DMT400074143	Potato	nucleus	50.51	48.28
CDY05691	Canola	nucleus	42.56	47.84
CDX74034	Canola	nucleus	47.69	47.69
PGSC0003DMT400013624	Potato	nucleus	50.26	47.46
Bra037499.1-P	Field mustard	nucleus	41.79	47.25
Solyc05g020020.2.1	Tomato	nucleus	49.23	46.83
PGSC0003DMT400044878	Potato	nucleus	47.69	45.26
Solyc07g045180.2.1	Tomato	nucleus	47.95	44.74
Solyc12g006240.1.1	Tomato	nucleus	29.49	42.75
TraesCS6B01G248400.1	Wheat	nucleus	21.54	26.17
TraesCS2B01G372000.1	Wheat	nucleus	20.77	25.39
TraesCS2B01G140300.1	Wheat	nucleus	23.59	23.77
TraesCS6B01G319500.1	Wheat	nucleus	20.26	21.35
TraesCS7B01G032800.1	Wheat	nucleus	13.08	20.99
TraesCS4B01G155800.1	Wheat	nucleus	21.03	20.65
TraesCS7B01G118300.1	Wheat	nucleus	20.26	20.63
TraesCS7B01G161500.1	Wheat	nucleus	25.38	20.29
TraesCS7B01G400600.1	Wheat	nucleus	18.46	19.35
TraesCS6B01G179000.2	Wheat	mitochondrion	17.95	18.67
TraesCS5B01G163500.1	Wheat	nucleus	15.13	18.15

Protein Annotations

EnsemblPlants:TraesCS6B01G315400.1	EnsemblPlantsGene:TraesCS6B01G315400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:CCT_domain	InterPro:IPR000315	InterPro:IPR010402
InterPro:Znf_B-box	PANTHER:PTHR31717	PANTHER:PTHR31717:SF6	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017
SEG:seg	SMART:SM00336	TIGR:cd00021	MapMan:15.5.1.2	:	:

Description

No Description!

Coordinates

chr6B:+:563322203..563324444

Molecular Weight (calculated)

42533.6 Da

IEP (calculated)

4.739

GRAVY (calculated)

-0.474

Length

390 amino acids

Sequence
(BLAST)

001: MIMGALCDFC GEQRPTIYCR SDAASLCLSC DRNVHSANTL SQRHMRTLLC DRCASQPAAV RCLEENTSLC QNCDWNGHAA TSLAAGHLRQ TINCYSGCPS
101: SEELARIWSF DFDAPSAAAE PNCEEGISMM SINDSGVSNH CGAQQDSSLL DMANTSLISD PHTGEKLNTG DEMNLRPLPT HQPAQSVSMA PKVPCVTDDD
201: MFNDGSIYEN FCVDDAGLTF ENYEELFGTP HIQTEQLFDD AGIDSYFGMK EMPAADCNEL KPAQPECSNA VSADSSLCVP ARQAISSISL SFYALTGESN
301: AGDHQDCGVS PLLLTGEPPW LPGPEGSIAS GSRGSALSRY MEKKKRRKFD KKIRYASRKA RADVRKRVKG RFVKAGEAYD YDPLNDTRSY

Best Arabidopsis Sequence Match ( AT3G07650.1 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY

Arabidopsis Description

COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.