Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040020.1-P | Field mustard | nucleus | 98.09 | 98.09 |
| CDY35952 | Canola | nucleus | 89.07 | 88.35 |
| CDY07979 | Canola | nucleus | 84.7 | 88.07 |
| CDY28029 | Canola | nucleus | 89.07 | 87.63 |
| AT3G07650.1 | Thale cress | nucleus | 86.34 | 84.95 |
| CDX74034 | Canola | nucleus | 85.25 | 80.0 |
| CDY48743 | Canola | nucleus | 68.03 | 71.14 |
| CDY05691 | Canola | nucleus | 65.57 | 69.16 |
| CDX85321 | Canola | nucleus | 66.94 | 68.25 |
| CDX86318 | Canola | nucleus | 65.3 | 66.76 |
| KRH17709 | Soybean | nucleus | 62.3 | 55.75 |
| KRH72628 | Soybean | nucleus | 61.48 | 55.56 |
| KRG89998 | Soybean | nucleus | 61.75 | 55.26 |
| KRH16989 | Soybean | nucleus | 61.2 | 54.5 |
| VIT_12s0057g01350.t01 | Wine grape | nucleus | 60.66 | 53.49 |
| PGSC0003DMT400074143 | Potato | nucleus | 58.47 | 52.45 |
| VIT_00s0194g00070.t01 | Wine grape | nucleus | 57.1 | 50.48 |
| PGSC0003DMT400013624 | Potato | nucleus | 56.01 | 49.64 |
| Solyc05g020020.2.1 | Tomato | nucleus | 55.46 | 49.51 |
| Os06t0298200-01 | Rice | nucleus | 54.92 | 49.26 |
| TraesCS7D01G220300.1 | Wheat | nucleus | 53.28 | 49.24 |
| TraesCS7A01G218600.1 | Wheat | nucleus | 53.28 | 49.24 |
| KXG19836 | Sorghum | nucleus | 55.19 | 49.15 |
| PGSC0003DMT400044878 | Potato | nucleus | 55.19 | 49.15 |
| Os02t0724000-01 | Rice | nucleus | 54.37 | 48.89 |
| Solyc07g045180.2.1 | Tomato | nucleus | 55.46 | 48.56 |
| TraesCS6A01G286400.3 | Wheat | nucleus | 51.09 | 47.95 |
| HORVU6Hr1G071950.2 | Barley | nucleus | 50.0 | 47.91 |
| TraesCS6D01G267100.1 | Wheat | nucleus | 50.82 | 47.45 |
| TraesCS6B01G315400.1 | Wheat | nucleus | 50.0 | 46.92 |
| EES07342 | Sorghum | nucleus | 51.91 | 46.8 |
| Zm00001d051684_P007 | Maize | nucleus | 51.91 | 46.8 |
| Solyc12g006240.1.1 | Tomato | nucleus | 34.15 | 46.47 |
| GSMUA_Achr7P20150_001 | Banana | nucleus | 51.91 | 46.12 |
| GSMUA_Achr3P04260_001 | Banana | nucleus | 52.73 | 45.95 |
| Zm00001d045804_P003 | Maize | nucleus | 54.37 | 45.64 |
| GSMUA_Achr5P22460_001 | Banana | nucleus | 48.63 | 45.52 |
| GSMUA_Achr9P12860_001 | Banana | nucleus | 51.64 | 45.32 |
| GSMUA_Achr10P... | Banana | nucleus | 49.45 | 45.14 |
| TraesCS7B01G125500.1 | Wheat | cytosol, nucleus, plastid | 40.98 | 44.51 |
| GSMUA_Achr5P04270_001 | Banana | nucleus | 50.0 | 43.36 |
| Zm00001d017885_P001 | Maize | nucleus | 45.63 | 36.23 |
| CDY69474 | Canola | nucleus, plastid | 8.47 | 32.29 |
| CDY64255 | Canola | nucleus | 30.87 | 30.46 |
| CDY15696 | Canola | nucleus | 23.5 | 29.76 |
| CDY55657 | Canola | nucleus | 30.87 | 29.27 |
| CDY02749 | Canola | nucleus, plastid | 20.49 | 28.96 |
| CDY04213 | Canola | nucleus | 25.41 | 27.68 |
| CDX88145 | Canola | nucleus | 20.49 | 25.51 |
| CDY19821 | Canola | nucleus | 20.49 | 25.51 |
| CDY36171 | Canola | nucleus | 19.95 | 25.17 |
| CDY68819 | Canola | nucleus | 26.5 | 25.06 |
| CDY30385 | Canola | nucleus | 26.5 | 25.06 |
| CDY45597 | Canola | nucleus | 19.67 | 24.91 |
| CDY11755 | Canola | nucleus | 26.5 | 24.68 |
| CDX85529 | Canola | nucleus | 20.77 | 23.97 |
| CDY58843 | Canola | nucleus, plastid | 22.13 | 23.68 |
| CDX90969 | Canola | nucleus | 20.77 | 23.68 |
| CDY66639 | Canola | nucleus | 25.96 | 23.57 |
| CDY25892 | Canola | nucleus | 21.31 | 23.42 |
| CDX80476 | Canola | nucleus, plastid | 21.04 | 23.4 |
| CDX90119 | Canola | nucleus | 26.5 | 23.15 |
| CDX69493 | Canola | nucleus | 21.31 | 23.15 |
| CDX87105 | Canola | nucleus, plastid | 19.95 | 23.03 |
| CDY26470 | Canola | nucleus | 20.77 | 22.82 |
| CDX80141 | Canola | nucleus | 20.22 | 22.29 |
| CDY53026 | Canola | nucleus | 20.22 | 22.16 |
| CDY71884 | Canola | nucleus | 17.76 | 22.03 |
| CDY71818 | Canola | nucleus | 17.76 | 21.96 |
| CDY26469 | Canola | nucleus | 21.86 | 21.86 |
| CDX69494 | Canola | nucleus | 21.86 | 21.74 |
| CDY49730 | Canola | nucleus | 12.57 | 21.1 |
| CDX91989 | Canola | nucleus | 11.48 | 18.42 |
| CDY07393 | Canola | nucleus | 26.5 | 18.1 |
| CDX74261 | Canola | nucleus | 10.93 | 17.54 |
| CDY48428 | Canola | nucleus | 11.75 | 15.93 |
Protein Annotations
| MapMan:15.5.1.2 | GO:A0A078G6N0 | UniProt:A0A078G6N0 | InterPro:CCT_domain | EnsemblPlants:CDY22125 | ProteinID:CDY22125 |
| ProteinID:CDY22125.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00018514001 | InterPro:IPR000315 | InterPro:IPR010402 |
| PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF39 | SMART:SM00336 |
| UniParc:UPI0004EF11DD | InterPro:Znf_B-box | SEG:seg | : | : | : |
Description
BnaC01g39760DBnaC01g39760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6N0]
Coordinates
chrLK032128:+:33023..35206
Molecular Weight (calculated)
40409.6 Da
IEP (calculated)
6.173
GRAVY (calculated)
-0.647
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SIHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNNN NNSNSLSSHH KRQSISCYSG
101: CPSSSELASL WSFCSDLSGS VCEQEMGMMN IDDDGQTNQN CNEAKKDVIV GSSSRLETSY AAHANSSFAK DIGVCEDDFY DNLGMDEVDL ALENYEELFG
201: TAFNSSGHLF GQCGIDSLFQ KHQAAPEGGN SVQPAESNDS FMSSKTEPII CYTSKPAHSN ISFSGVTGES CAGDFQECGA SSSMQLLGDP PWYPQTSQDN
301: NAFSHSVTRN NAVMRYKEKK KARKFDKTVR YASRKARADV RRRVKGRFIK AGEAYDYDPL TPTRSY
101: CPSSSELASL WSFCSDLSGS VCEQEMGMMN IDDDGQTNQN CNEAKKDVIV GSSSRLETSY AAHANSSFAK DIGVCEDDFY DNLGMDEVDL ALENYEELFG
201: TAFNSSGHLF GQCGIDSLFQ KHQAAPEGGN SVQPAESNDS FMSSKTEPII CYTSKPAHSN ISFSGVTGES CAGDFQECGA SSSMQLLGDP PWYPQTSQDN
301: NAFSHSVTRN NAVMRYKEKK KARKFDKTVR YASRKARADV RRRVKGRFIK AGEAYDYDPL TPTRSY
001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
Arabidopsis Description
COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.