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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 3
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69493
CDX70553
CDX78568
CDX78656
CDX85529
CDX85608
CDX86817
CDX90969
CDX91076
CDY12145
CDY25880
CDY26433
CDY26470
CDY40851
CDY50512
CDY52540

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G15850.1 CDY25880 AT1G53090.1 16854975
AT5G15850.1 CDY50512 AT1G53090.1 16854975
AT5G15850.1 CDY25880 AT1G53090.1 18812498
AT5G15850.1 CDY50512 AT1G53090.1 18812498
AT5G15850.1 CDY12145 AT2G32950.1 18812498
AT5G15850.1 CDY52540 AT2G32950.1 18812498
AT5G15850.1 CDX86817 AT4G11110.1 16854975
AT5G15850.1 CDY40851 AT4G11110.1 16854975
AT5G15850.1 CDX70553 AT5G14250.1 18812498
AT5G15850.1 CDX78568 AT5G14250.1 18812498
AT5G15850.1 CDX78656 AT5G14250.1 18812498
AT5G15850.1 CDX85608 AT5G14250.1 18812498
AT5G15850.1 CDX91076 AT5G14250.1 18812498
AT5G15850.1 CDY26433 AT5G14250.1 18812498
AT5G15850.1 CDX69493 AT5G15850.1 18812498
AT5G15850.1 CDX85529 AT5G15850.1 18812498
AT5G15850.1 CDX90969 AT5G15850.1 18812498
AT5G15850.1 CDY26470 AT5G15850.1 18812498
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra023541.1-P Field mustard nucleus 98.74 99.37
CDX90969 Canola nucleus 93.69 92.52
CDY69474 Canola nucleus, plastid 23.66 78.12
CDY26470 Canola nucleus 78.23 74.47
CDX69493 Canola nucleus 78.55 73.89
AT5G15850.1 Thale cress nucleus 72.24 64.51
CDY71884 Canola nucleus 52.68 56.61
CDY71818 Canola nucleus 52.68 56.42
Solyc02g089500.2.1 Tomato nucleus 22.71 50.7
CDX74261 Canola nucleus 34.7 48.25
KRH18308 Soybean nucleus 54.26 47.65
CDX91989 Canola nucleus 34.07 47.37
KRG93763 Soybean nucleus 53.31 46.17
KRH45169 Soybean nucleus 50.47 45.98
VIT_14s0083g00640.t01 Wine grape nucleus 56.15 45.52
CDY26469 Canola nucleus 52.37 45.36
KRH01455 Soybean nucleus 50.16 45.17
CDX69494 Canola nucleus 52.37 45.11
CDY36171 Canola nucleus 40.06 43.79
CDY45597 Canola nucleus 39.75 43.6
PGSC0003DMT400026065 Potato nucleus 54.89 42.13
CDY19821 Canola nucleus 38.49 41.5
CDY02749 Canola nucleus, plastid 33.12 40.54
PGSC0003DMT400026068 Potato nucleus 51.73 40.49
CDX88145 Canola nucleus 37.22 40.14
CDX87105 Canola nucleus, plastid 38.17 38.17
CDX80476 Canola nucleus, plastid 38.8 37.39
CDY58843 Canola nucleus, plastid 36.91 34.21
CDY25892 Canola nucleus 34.38 32.73
CDY49730 Canola nucleus 18.61 27.06
CDY15696 Canola nucleus 22.08 24.22
CDY07979 Canola nucleus 25.87 23.3
CDX80141 Canola nucleus 23.34 22.29
CDY53026 Canola nucleus 23.34 22.16
CDY48743 Canola nucleus 23.97 21.71
CDY35952 Canola nucleus 24.92 21.41
CDY05691 Canola nucleus 23.34 21.33
CDY28029 Canola nucleus 24.92 21.24
CDY22125 Canola nucleus 23.97 20.77
CDX74034 Canola nucleus 25.24 20.51
CDX86318 Canola nucleus 22.4 19.83
CDX85321 Canola nucleus 22.4 19.78
CDY66639 Canola nucleus 24.61 19.35
CDY64255 Canola nucleus 21.45 18.33
CDY68819 Canola nucleus 22.08 18.09
CDY30385 Canola nucleus 22.08 18.09
CDY11755 Canola nucleus 22.4 18.07
HORVU0Hr1G022380.1 Barley cytosol 16.09 17.96
CDX90119 Canola nucleus 23.34 17.66
CDY55657 Canola nucleus 21.45 17.62
CDY04213 Canola nucleus 16.72 15.77
CDY48428 Canola nucleus 10.09 11.85
CDY07393 Canola nucleus 17.67 10.45
Protein Annotations
MapMan:15.5.1.2GO:A0A078DB68InterPro:CCT_domainEnsemblPlants:CDX85529ProteinID:CDX85529ProteinID:CDX85529.1
GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0008270EnsemblPlantsGene:GSBRNA2T00143240001InterPro:IPR000315InterPro:IPR010402PFAM:PF00643PFAM:PF06203
PFscan:PS50119PFscan:PS51017PANTHER:PTHR31319PANTHER:PTHR31319:SF39SMART:SM00336UniParc:UPI0004EE8213
InterPro:Znf_B-boxSEG:seg::::
Description
BnaA02g02840D
Coordinates
chrLK031842:+:496887..497840
Molecular Weight (calculated)
35453.7 Da
IEP (calculated)
7.247
GRAVY (calculated)
-0.570
Length
317 amino acids
Sequence
(BLAST)
001: MLKQDRNWTQ VCNTCRSAAC TVYCRADSAY LCSTCDAQVH AANLLASRHE RVRVCEACER APAAFFCKAD AASLCIACDS QIHLVNPLAR RHQRVPILPI
101: SSMATNHSSE TTAMTGPENI VVMGQEEEDE TEVASWLLPS SEKNSGNNNN SLDLVDYQQD YNVPRSRYAR DGVVPLQVEE SKAHMHHEQH NFQFGFTNVS
201: SGCHMVSLVP ESTTSDTTVV LHSPSPKAAT DQLPDPSTQI LSPGEREARV MRYREKKKTR KFEKRVRYAS RKAYAETRPR IKGRFVKREE VDAEAEADQG
301: FSTMTMFNTG YGVVPSL
Best Arabidopsis Sequence Match ( AT5G15850.1 )
(BLAST)
001: MLKVESNWAQ ACDTCRSAAC TVYCRADSAY LCSSCDAQVH AANRLASRHE RVRVCQSCER APAAFFCKAD AASLCTTCDS EIHSANPLAR RHQRVPILPI
101: SEYSYSSTAT NHSCETTVTD PENRLVLGQE EEDEDEAEAA SWLLPNSGKN SGNNNGFSIG DEFLNLVDYS SSDKQFTDQS NQYQLDCNVP QRSYGEDGVV
201: PLQIEVSKGM YQEQQNFQLS INCGSWGALR SSNGSLSHMV NVSSMDLGVV PESTTSDATV SNPRSPKAVT DQPPYPPAQM LSPRDREARV LRYREKKKMR
301: KFEKTIRYAS RKAYAEKRPR IKGRFAKKKD VDEEANQAFS TMITFDTGYG IVPSF
Arabidopsis Description
COL1Zinc finger protein CONSTANS-LIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:O50055]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.