Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH45169 | Soybean | nucleus | 88.07 | 89.08 |
| VIT_14s0083g00640.t01 | Wine grape | nucleus | 66.48 | 59.85 |
| KRH18308 | Soybean | nucleus | 61.36 | 59.83 |
| KRG93763 | Soybean | nucleus | 60.51 | 58.2 |
| AT3G02380.1 | Thale cress | nucleus | 55.11 | 55.91 |
| PGSC0003DMT400026065 | Potato | nucleus | 64.77 | 55.21 |
| PGSC0003DMT400026068 | Potato | nucleus | 62.78 | 54.57 |
| Bra021464.1-P | Field mustard | nucleus | 48.86 | 53.58 |
| CDY71884 | Canola | nucleus | 44.6 | 53.22 |
| CDY71818 | Canola | nucleus | 44.32 | 52.7 |
| Bra023541.1-P | Field mustard | nucleus | 45.45 | 50.79 |
| AT5G15850.1 | Thale cress | nucleus | 51.14 | 50.7 |
| CDX85529 | Canola | nucleus | 45.17 | 50.16 |
| CDX90969 | Canola | nucleus | 45.45 | 49.84 |
| GSMUA_Achr4P18680_001 | Banana | nucleus | 12.22 | 48.86 |
| Solyc02g089500.2.1 | Tomato | nucleus | 19.6 | 48.59 |
| GSMUA_Achr3P28130_001 | Banana | nucleus | 38.64 | 48.57 |
| CDX69493 | Canola | nucleus | 46.31 | 48.37 |
| Bra008668.1-P | Field mustard | nucleus | 46.02 | 48.07 |
| KRH61628 | Soybean | nucleus, plastid | 42.05 | 47.9 |
| KRH52295 | Soybean | nucleus, plastid | 42.05 | 47.74 |
| CDY26470 | Canola | nucleus | 44.89 | 47.45 |
| AT5G15840.1 | Thale cress | nucleus | 48.86 | 46.11 |
| GSMUA_Achr9P22690_001 | Banana | nucleus, plastid | 37.5 | 45.36 |
| Bra008669.1-P | Field mustard | nucleus | 46.02 | 44.26 |
| CDY26469 | Canola | nucleus | 46.02 | 44.26 |
| CDX69494 | Canola | nucleus | 46.02 | 44.02 |
| KRH02915 | Soybean | nucleus | 42.61 | 40.11 |
| KRH18980 | Soybean | nucleus | 41.19 | 39.73 |
| HORVU0Hr1G022380.1 | Barley | cytosol | 19.03 | 23.59 |
| KRH16989 | Soybean | nucleus | 25.0 | 21.41 |
| KRH72628 | Soybean | nucleus | 24.43 | 21.23 |
| KRG96381 | Soybean | nucleus | 20.17 | 20.23 |
| KRH68113 | Soybean | nucleus | 19.89 | 20.06 |
| KRG89998 | Soybean | nucleus | 22.73 | 19.56 |
| KRH17709 | Soybean | nucleus | 22.73 | 19.56 |
| KRH31920 | Soybean | nucleus | 19.32 | 19.54 |
| KRH71535 | Soybean | nucleus | 18.75 | 19.41 |
| KRH06865 | Soybean | nucleus | 19.89 | 18.37 |
| KRH26833 | Soybean | nucleus | 21.88 | 18.2 |
| KRH22524 | Soybean | nucleus | 21.31 | 17.73 |
| KRG94656 | Soybean | nucleus | 18.75 | 17.14 |
| KRG90917 | Soybean | nucleus | 13.92 | 11.19 |
| KRH35868 | Soybean | nucleus | 13.35 | 10.73 |
Protein Annotations
| MapMan:15.5.1.2 | EMBL:ACUP02011515 | InterPro:CCT_domain | EnsemblPlantsGene:GLYMA_18G278100 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008270 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009909 | UniProt:I1N4U7 | InterPro:IPR000315 | InterPro:IPR010402 | EnsemblPlants:KRH01455 |
| ProteinID:KRH01455 | ProteinID:KRH01455.1 | PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 |
| PANTHER:PTHR31319 | PANTHER:PTHR31319:SF39 | SMART:SM00336 | UniParc:UPI00023D90AD | InterPro:Znf_B-box | SEG:seg |
Description
hypothetical protein
Coordinates
chr18:-:55964787..55967138
Molecular Weight (calculated)
38988.4 Da
IEP (calculated)
6.265
GRAVY (calculated)
-0.455
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEGQATTPT WPRMCDTCRS VPSTVFCRSH TAFLCATCDT RLHVSLTWHE RVWVCEACER APAAFLCKAD AASLCASCDA DIHAANPLAS RHHRVPILPI
101: AAANNNNNDD DDVADVDDED ETASWLLLNP IKSATVPNTN NNNNNNGFLY NGEVDEYLDL VDNCNSCGDN NHFASAAATT DHYAQHQHFA GVSQKSYAGD
201: SVVPVQQHQH FQLGLEFDNS KPAFSYNGSV SQSVSVSSMD IGVVPESPMR DVSIAHTRPP KGTIDLFSGP PIQVPSHFSP MDREARVLRY REKKKMRKFE
301: KTIRYASRKA YAETRPRIKG RFAKRTDVEA EVDQMFSTTL ITEVGYGIVP SF
101: AAANNNNNDD DDVADVDDED ETASWLLLNP IKSATVPNTN NNNNNNGFLY NGEVDEYLDL VDNCNSCGDN NHFASAAATT DHYAQHQHFA GVSQKSYAGD
201: SVVPVQQHQH FQLGLEFDNS KPAFSYNGSV SQSVSVSSMD IGVVPESPMR DVSIAHTRPP KGTIDLFSGP PIQVPSHFSP MDREARVLRY REKKKMRKFE
301: KTIRYASRKA YAETRPRIKG RFAKRTDVEA EVDQMFSTTL ITEVGYGIVP SF
001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
Arabidopsis Description
COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.