Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG96381 | Soybean | nucleus | 93.41 | 92.88 |
| KRH31920 | Soybean | nucleus | 57.88 | 58.05 |
| KRH71535 | Soybean | nucleus | 55.87 | 57.35 |
| Solyc09g074560.2.1 | Tomato | nucleus | 55.59 | 52.01 |
| PGSC0003DMT400029591 | Potato | nucleus | 54.73 | 50.4 |
| VIT_07s0104g01360.t01 | Wine grape | nucleus | 56.16 | 49.75 |
| AT2G47890.1 | Thale cress | nucleus | 44.7 | 46.99 |
| CDY53026 | Canola | nucleus | 44.41 | 46.41 |
| CDX80141 | Canola | nucleus | 44.13 | 46.39 |
| Bra004423.1-P | Field mustard | nucleus | 44.13 | 46.11 |
| GSMUA_Achr6P13590_001 | Banana | cytosol, mitochondrion, nucleus | 8.88 | 34.83 |
| GSMUA_Achr3P08880_001 | Banana | nucleus | 35.24 | 30.15 |
| Os07t0667300-01 | Rice | nucleus | 32.38 | 29.74 |
| TraesCS4D01G167300.1 | Wheat | nucleus | 32.66 | 28.72 |
| TraesCS4B01G155800.1 | Wheat | nucleus | 32.38 | 28.46 |
| TraesCS2D01G121400.1 | Wheat | nucleus | 30.95 | 28.35 |
| Os03t0351100-01 | Rice | nucleus | 32.66 | 28.29 |
| Zm00001d029149_P001 | Maize | nucleus | 32.09 | 28.21 |
| TraesCS2A01G119600.1 | Wheat | nucleus | 30.66 | 28.01 |
| EER94860 | Sorghum | nucleus | 32.95 | 27.84 |
| Zm00001d007107_P001 | Maize | nucleus | 32.38 | 27.63 |
| TraesCS4A01G140600.1 | Wheat | nucleus | 32.38 | 27.43 |
| TraesCS2B01G140300.1 | Wheat | nucleus | 30.37 | 27.39 |
| EER99873 | Sorghum | nucleus | 31.52 | 26.63 |
| KRH06865 | Soybean | nucleus | 28.08 | 25.72 |
| KRG94656 | Soybean | nucleus | 28.37 | 25.71 |
| HORVU4Hr1G048700.1 | Barley | nucleus, plastid | 32.09 | 24.03 |
| KRH61628 | Soybean | nucleus, plastid | 20.63 | 23.3 |
| KRH52295 | Soybean | nucleus, plastid | 20.63 | 23.23 |
| Zm00001d022500_P001 | Maize | nucleus | 12.03 | 23.2 |
| KRH72628 | Soybean | nucleus | 26.65 | 22.96 |
| KRG89998 | Soybean | nucleus | 26.65 | 22.74 |
| KRH17709 | Soybean | nucleus | 26.36 | 22.49 |
| KRH16989 | Soybean | nucleus | 26.07 | 22.14 |
| KRH45169 | Soybean | nucleus | 21.2 | 21.26 |
| KRH18980 | Soybean | nucleus | 22.06 | 21.1 |
| KRH02915 | Soybean | nucleus | 22.35 | 20.86 |
| KRG93763 | Soybean | nucleus | 21.78 | 20.77 |
| KRH26833 | Soybean | nucleus | 24.93 | 20.57 |
| KRH18308 | Soybean | nucleus | 20.92 | 20.22 |
| KRH01455 | Soybean | nucleus | 20.06 | 19.89 |
| KRH22524 | Soybean | nucleus | 23.78 | 19.62 |
| HORVU2Hr1G020760.2 | Barley | cytosol, mitochondrion | 18.91 | 16.62 |
| KRG90917 | Soybean | nucleus | 17.77 | 14.16 |
| KRH35868 | Soybean | nucleus | 17.48 | 13.93 |
Protein Annotations
| EntrezGene:100817838 | MapMan:15.5.1.2 | EMBL:ACUP02002102 | InterPro:CCT_domain | EnsemblPlantsGene:GLYMA_03G209800 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0008270 | EMBL:HM068896 | UniProt:I1JQH3 | InterPro:IPR000315 | InterPro:IPR010402 | EnsemblPlants:KRH68113 |
| ProteinID:KRH68113 | ProteinID:KRH68113.1 | PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 |
| PANTHER:PTHR31717 | PANTHER:PTHR31717:SF16 | SMART:SM00336 | UniParc:UPI0002339A84 | InterPro:Znf_B-box | SEG:seg |
Description
hypothetical protein
Coordinates
chr3:-:41649360..41654343
Molecular Weight (calculated)
38813.4 Da
IEP (calculated)
6.389
GRAVY (calculated)
-0.617
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGEARSCDY CGHSTALLYC RADSAKLCFS CDREVHSTNQ LFSKHTRTLL CDACDHSPAT ILCSTDTSVL CQNCDWEKHN PALSDSLHER RPLEGFTGCP
101: SVSELLSIVG FSDLSKKSLL SSPQGSGADG IFGGEIEGLS DLFVWDSPSF VTLDDLISSS PSSHSFQAME VPPLPKNRKA ACGQHKEEIL SQLRELAKSE
201: PLDLEPYVSS GNLSSGFERE PEADIFPSHE WHRESSEPMY QVVPPDPLMR TYTEEIPFKH STSAVGETQT YGDNGGKPSI SLKSETLSTT PKAAACELTS
301: QERDSALLRY KQKKKTRRFD KHIRYESRKV RAESRVRVKG RFAKMEHEH
101: SVSELLSIVG FSDLSKKSLL SSPQGSGADG IFGGEIEGLS DLFVWDSPSF VTLDDLISSS PSSHSFQAME VPPLPKNRKA ACGQHKEEIL SQLRELAKSE
201: PLDLEPYVSS GNLSSGFERE PEADIFPSHE WHRESSEPMY QVVPPDPLMR TYTEEIPFKH STSAVGETQT YGDNGGKPSI SLKSETLSTT PKAAACELTS
301: QERDSALLRY KQKKKTRRFD KHIRYESRKV RAESRVRVKG RFAKMEHEH
001: MEAEEGHQRD RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVANQLFAKH FRSLLCDSCN ESPSSLFCET ERSVLCQNCD WQHHTASSSL HSRRPFEGFT
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
Arabidopsis Description
COL13Zinc finger protein CONSTANS-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:O82256]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.