Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g074560.2.1 | Tomato | nucleus | 91.29 | 92.76 |
| KRG96381 | Soybean | nucleus | 50.92 | 54.99 |
| KRH68113 | Soybean | nucleus | 50.4 | 54.73 |
| VIT_07s0104g01360.t01 | Wine grape | nucleus | 54.35 | 52.28 |
| CDX80141 | Canola | nucleus | 42.74 | 48.8 |
| Bra004423.1-P | Field mustard | nucleus | 42.74 | 48.5 |
| AT2G47890.1 | Thale cress | nucleus | 42.22 | 48.19 |
| CDY53026 | Canola | nucleus | 41.95 | 47.6 |
| KRH31920 | Soybean | nucleus | 41.95 | 45.69 |
| KRH71535 | Soybean | nucleus | 40.11 | 44.71 |
| GSMUA_Achr6P13590_001 | Banana | cytosol, mitochondrion, nucleus | 7.92 | 33.71 |
| GSMUA_Achr3P08880_001 | Banana | nucleus | 32.98 | 30.64 |
| Os07t0667300-01 | Rice | nucleus | 30.61 | 30.53 |
| TraesCS2A01G119600.1 | Wheat | nucleus | 30.34 | 30.1 |
| TraesCS2D01G121400.1 | Wheat | nucleus | 30.08 | 29.92 |
| Os03t0351100-01 | Rice | nucleus | 31.66 | 29.78 |
| TraesCS2B01G140300.1 | Wheat | nucleus | 29.82 | 29.2 |
| EER99873 | Sorghum | nucleus | 31.66 | 29.06 |
| TraesCS4D01G167300.1 | Wheat | nucleus | 30.34 | 28.97 |
| Zm00001d029149_P001 | Maize | nucleus | 30.08 | 28.72 |
| TraesCS4B01G155800.1 | Wheat | nucleus | 30.08 | 28.72 |
| Zm00001d007107_P001 | Maize | nucleus | 30.87 | 28.61 |
| EER94860 | Sorghum | nucleus | 31.13 | 28.57 |
| TraesCS4A01G140600.1 | Wheat | nucleus | 30.34 | 27.91 |
| PGSC0003DMT400065377 | Potato | nucleus | 31.4 | 26.27 |
| Zm00001d022500_P001 | Maize | nucleus | 11.87 | 24.86 |
| HORVU4Hr1G048700.1 | Barley | nucleus, plastid | 30.34 | 24.68 |
| PGSC0003DMT400067657 | Potato | nucleus | 19.26 | 21.04 |
| PGSC0003DMT400075520 | Potato | nucleus | 19.79 | 21.01 |
| PGSC0003DMT400013624 | Potato | nucleus | 21.9 | 20.1 |
| PGSC0003DMT400074143 | Potato | nucleus | 21.37 | 19.85 |
| PGSC0003DMT400044878 | Potato | nucleus | 21.37 | 19.71 |
| PGSC0003DMT400026068 | Potato | nucleus | 20.05 | 18.77 |
| PGSC0003DMT400003198 | Potato | nucleus | 20.58 | 18.48 |
| PGSC0003DMT400026065 | Potato | nucleus | 20.05 | 18.4 |
| PGSC0003DMT400070680 | Potato | nucleus | 18.47 | 18.18 |
| HORVU2Hr1G020760.2 | Barley | cytosol, mitochondrion | 18.73 | 17.88 |
| PGSC0003DMT400015373 | Potato | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 20.58 | 15.95 |
| PGSC0003DMT400016342 | Potato | nucleus | 9.76 | 14.02 |
| PGSC0003DMT400068637 | Potato | nucleus | 9.76 | 13.96 |
| PGSC0003DMT400092769 | Potato | nucleus | 8.97 | 13.13 |
Protein Annotations
| EntrezGene:102582339 | MapMan:15.5.1.2 | InterPro:CCT_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0008270 | GO:GO:0043565 | GO:GO:0044212 | InterPro:IPR000315 | InterPro:IPR010402 | EMBL:KX576519 |
| UniProt:M1AT27 | PFAM:PF00643 | PFAM:PF06203 | EnsemblPlantsGene:PGSC0003DMG400011378 | PGSC:PGSC0003DMG400011378 | EnsemblPlants:PGSC0003DMT400029591 |
| PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF16 | SMART:SM00336 | UniParc:UPI000295E6F6 |
| RefSeq:XP_006359430.1 | InterPro:Znf_B-box | SEG:seg | : | : | : |
Description
CONSTANS-like zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011378]
Coordinates
chr9:-:52024565..52027713
Molecular Weight (calculated)
43062.2 Da
IEP (calculated)
6.115
GRAVY (calculated)
-0.792
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MTELKKDQEN HQQQQQEPQR RHLCDFCGNN TALLYCRADS AKLCFTCDRE VHSTNQLFTK HTRWLLCNLC DSSPASILCC TESSVLCQNC DWESHNKQLS
101: LHERRPLEGF SGCPSVSELL SILGFEDLGK KELLYGGDGS YGFSDWVIWD TPSVVSLDDL IANNDSEHNF QAIGVPPLPK NRNAACGKHK EEILSQLREL
201: SKLEPNSGDD QDETVPTIGF QSMEPVQNCP LRFKGLGFMQ NSDQHVVPSS EGSAFHWHGD TGEFADQGFS SSLMDCFIET KCLLPNRDSD VCDASGGANE
301: EQSHNPPTTE TFQMVPKVVH RELNSQERET AVSRYKEKKK TRRYEKHIRY ESRKARAETR TRIKGRFAKM DYRDSSVHQ
101: LHERRPLEGF SGCPSVSELL SILGFEDLGK KELLYGGDGS YGFSDWVIWD TPSVVSLDDL IANNDSEHNF QAIGVPPLPK NRNAACGKHK EEILSQLREL
201: SKLEPNSGDD QDETVPTIGF QSMEPVQNCP LRFKGLGFMQ NSDQHVVPSS EGSAFHWHGD TGEFADQGFS SSLMDCFIET KCLLPNRDSD VCDASGGANE
301: EQSHNPPTTE TFQMVPKVVH RELNSQERET AVSRYKEKKK TRRYEKHIRY ESRKARAETR TRIKGRFAKM DYRDSSVHQ
001: MEAEEGHQRD RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVANQLFAKH FRSLLCDSCN ESPSSLFCET ERSVLCQNCD WQHHTASSSL HSRRPFEGFT
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
Arabidopsis Description
COL13Zinc finger protein CONSTANS-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:O82256]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.