Factsheet for PGSC0003DMT400075520

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g096500.1.1	Tomato	nucleus	92.16	91.9
PGSC0003DMT400068637	Potato	nucleus	60.78	81.89
PGSC0003DMT400016342	Potato	nucleus	59.38	80.3
PGSC0003DMT400092769	Potato	nucleus	55.18	76.06
PGSC0003DMT400067657	Potato	nucleus	69.47	71.47
VIT_04s0008g07340.t01	Wine grape	nucleus, plastid	57.14	58.79
CDX88145	Canola	nucleus	46.78	56.8
CDY19821	Canola	nucleus	46.5	56.46
CDX87105	Canola	nucleus, plastid	46.5	52.37
CDX80476	Canola	nucleus, plastid	47.9	51.98
Bra009805.1-P	Field mustard	nucleus	50.14	51.0
Bra036528.1-P	Field mustard	nucleus	49.02	50.72
AT5G24930.1	Thale cress	nucleus	50.98	50.28
PGSC0003DMT400070680	Potato	nucleus	45.1	41.82
PGSC0003DMT400026068	Potato	nucleus	45.38	40.0
PGSC0003DMT400026065	Potato	nucleus	45.94	39.71
PGSC0003DMT400074143	Potato	nucleus	24.09	21.08
PGSC0003DMT400044878	Potato	nucleus	24.09	20.92
PGSC0003DMT400013624	Potato	nucleus	23.81	20.58
PGSC0003DMT400029591	Potato	nucleus	21.01	19.79
PGSC0003DMT400003198	Potato	nucleus	22.97	19.43
PGSC0003DMT400065377	Potato	nucleus	21.85	17.22
PGSC0003DMT400015373	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	20.17	14.72

Protein Annotations

EntrezGene:102578495	MapMan:15.5.1.2	ProteinID:ABH09237	ProteinID:ABH09237.1	InterPro:CCT_domain	EMBL:DQ882684
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	EMBL:KX576514	UniProt:M1CVB0
PFAM:PF00643	PFAM:PF06203	EnsemblPlantsGene:PGSC0003DMG400029365	PGSC:PGSC0003DMG400029365	EnsemblPlants:PGSC0003DMT400075520	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF14	SMART:SM00336	UniParc:UPI0002967EAD	RefSeq:XP_006342453.1
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

CONSTANS [Source:PGSC_GENE;Acc:PGSC0003DMG400029365]

Coordinates

chr12:+:58153725..58155118

Molecular Weight (calculated)

39095.2 Da

IEP (calculated)

5.247

GRAVY (calculated)

-0.486

Length

357 amino acids

Sequence
(BLAST)

001: MGTENWSLTA KLCDSCKTTP ATVFCRADSA FLCLGCDCKI HAANKLASRH ARVWVCEVCE QAPAIVTCKA DAAALCVTCD HDIHSANPLA RRHERFPVVP
101: FYDSAVAKSD GGGDADADAA DDEKYFDSTS ENPSQPEEEA EAASWILPTP KEGTDQYKSA DYLFNDMDSY LDIDLMSCEQ KPHIIHHQHG HYSSDGVVPV
201: QNNNNNNETS THLPGPVVDG FPTYEIDFAG SKPYMYNFTS QSISQSVSSS SIDVGVVPDH SAMTDVSNTF VMNSSAGTGT GTDAVPNAVS GLDREARVMR
301: YREKRKNRKF EKTIRYASRK AYAETRPRIK GRFAKRTEIE IDSLIAADAS YGVVPSF

Best Arabidopsis Sequence Match ( AT5G24930.1 )
(BLAST)

001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF

Arabidopsis Description

COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.