Factsheet for Bra009805.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88145	Canola	nucleus	83.76	100.0
Bra036528.1-P	Field mustard	nucleus	88.03	89.57
AT5G24930.1	Thale cress	nucleus	91.74	88.95
Bra032061.1-P	Field mustard	nucleus	52.71	64.01
VIT_04s0008g07340.t01	Wine grape	nucleus, plastid	63.25	63.98
Solyc12g096500.1.1	Tomato	nucleus	52.71	51.68
PGSC0003DMT400075520	Potato	nucleus	51.0	50.14
PGSC0003DMT400067657	Potato	nucleus	49.0	49.57
Solyc08g006530.2.1	Tomato	nucleus	49.0	49.28
Bra020425.1-P	Field mustard	nucleus, plastid	45.3	46.49
Bra002709.1-P	Field mustard	nucleus	26.78	43.12
Bra021464.1-P	Field mustard	nucleus	37.32	40.81
Bra023541.1-P	Field mustard	nucleus	36.47	40.63
Bra001043.1-P	Field mustard	nucleus	26.21	40.35
Bra008668.1-P	Field mustard	nucleus	37.61	39.17
Bra008669.1-P	Field mustard	nucleus	38.46	36.89
TraesCS6D01G269500.1	Wheat	nucleus	38.18	36.31
TraesCS6B01G319500.1	Wheat	nucleus	37.89	35.95
TraesCS6A01G289400.1	Wheat	nucleus	37.61	35.77
EER88227	Sorghum	nucleus	38.75	33.09
Os06t0275000-01	Rice	mitochondrion	36.75	32.66
Zm00001d045735_P002	Maize	extracellular, vacuole	39.03	32.01
OQU85473	Sorghum	nucleus	33.05	31.69
TraesCS7B01G118300.1	Wheat	nucleus	34.47	31.59
TraesCS7D01G213000.2	Wheat	nucleus	34.19	31.33
TraesCS7A01G211300.1	Wheat	nucleus	33.9	30.91
Bra030070.1-P	Field mustard	nucleus	20.23	23.05
Bra001264.1-P	Field mustard	nucleus	21.37	21.37
Bra020709.1-P	Field mustard	nucleus	21.08	21.08
Bra004423.1-P	Field mustard	nucleus	19.94	20.96
Bra040020.1-P	Field mustard	nucleus	21.65	20.77
Bra041077.1-P	Field mustard	nucleus	23.36	20.1
Bra029666.1-P	Field mustard	nucleus	21.94	19.95
Bra010908.1-P	Field mustard	nucleus	23.36	19.62
Bra037499.1-P	Field mustard	nucleus	19.09	19.42
Bra023858.1-P	Field mustard	nucleus	19.94	18.13

Protein Annotations

MapMan:15.5.1.2	EnsemblPlantsGene:Bra009805	EnsemblPlants:Bra009805.1	EnsemblPlants:Bra009805.1-P	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	UniProt:M4D008	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF14	SMART:SM00336	UniParc:UPI000253F272
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

AT5G24930 (E=6e-168) ATCOL4, COL4 | zinc finger (B-box type) family protein

Coordinates

chrA06:+:17398297..17399880

Molecular Weight (calculated)

37945.0 Da

IEP (calculated)

5.655

GRAVY (calculated)

-0.442

Length

351 amino acids

Sequence
(BLAST)

001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSD
101: SDGSAKHAAV NFLDDCYFSD LDGNASREEE DEAASWLLPN PKTTTAVATA AEAVPGDSPE MNTGQQYLFP DLDLDYGTVD PKVETQEQNS SGTDGVVPVE
201: NRTVKVATVN ENCYELDFTG GSKGFTYGYN SISHSQVSSS SLEVGVVPDG GSVADVSYPY GGAATSVTDP GTQRAVPLTA AEREARVMRY REKRKNRKFE
301: KTIRYASRKA YAEMRPRIKG RFAKRTDTND SNDVVVGHGG IFSGFGLVPT F

Best Arabidopsis Sequence Match ( AT5G24930.1 )
(BLAST)

001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF

Arabidopsis Description

COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.