Factsheet for Solyc08g006530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067657	Potato	nucleus	92.55	93.08
Solyc12g096500.1.1	Tomato	nucleus	70.49	68.72
VIT_04s0008g07340.t01	Wine grape	nucleus, plastid	56.73	57.06
CDY19821	Canola	nucleus	45.85	54.42
CDX88145	Canola	nucleus	45.27	53.74
CDX87105	Canola	nucleus, plastid	45.85	50.47
CDX80476	Canola	nucleus, plastid	46.7	49.54
Bra009805.1-P	Field mustard	nucleus	49.28	49.0
Bra036528.1-P	Field mustard	nucleus	48.42	48.99
AT5G24930.1	Thale cress	nucleus	50.72	48.9
Solyc02g089500.2.1	Tomato	nucleus	18.34	45.07
Solyc02g089540.2.1	Tomato	nucleus	45.27	40.41
Solyc07g006630.2.1	Tomato	nucleus	43.55	39.38
Solyc02g089520.1.1	Tomato	nucleus	44.13	37.65
Solyc09g074560.2.1	Tomato	nucleus	20.63	19.3
Solyc05g020020.2.1	Tomato	nucleus	22.64	19.27
Solyc07g045180.2.1	Tomato	nucleus	22.92	19.14
Solyc05g046040.1.1	Tomato	nucleus	22.64	18.85
Solyc12g006240.1.1	Tomato	nucleus	13.75	17.84
Solyc05g024010.2.1	Tomato	nucleus	22.06	17.04
Solyc04g007470.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	18.62	13.68

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150
GO:GO:0008270	GO:GO:0009416	GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909
InterPro:IPR000315	InterPro:IPR010402	UniProt:K4CIE1	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF14	SMART:SM00336	EnsemblPlantsGene:Solyc08g006530.2	EnsemblPlants:Solyc08g006530.2.1
UniParc:UPI000276C046	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:+:1142836..1144790

Molecular Weight (calculated)

38660.7 Da

IEP (calculated)

5.151

GRAVY (calculated)

-0.602

Length

349 amino acids

Sequence
(BLAST)

001: MVAESWSTTA KRCDACKATP STVFCKADMA FLCLTCDSKI HAANKLASRH ARVWVCEVCE HAPASVTCKA DAAALCTTCD QDIHSANPLA RRHERIPVVP
101: FYDSASASSS RGAAADGNDD PQQHDDDTEE EEAEAESWLL QAPSTNNNTQ GIEYKSVEYL FSDVDPYVEM DIIADQKPSN DIAQLHNQEE YKEDCVVPHV
201: QNNKNDIQLQ GPVVDGYPTY EIDFSGGSKP FMYNFTSQSI SQSVSSSSME VGVVPDHNTM TDVSNTFVRN SAIDGLPNPV SSLDRKARVL RYREKRKNRK
301: FEKTIRYASR KAYAETRPRI KGRFAKRTEN EVGDSLVASD ASYGVVPSF

Best Arabidopsis Sequence Match ( AT5G24930.1 )
(BLAST)

001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF

Arabidopsis Description

COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.