Factsheet for Bra036528.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19821	Canola	nucleus	85.22	100.0
Bra009805.1-P	Field mustard	nucleus	89.57	88.03
AT5G24930.1	Thale cress	nucleus	90.14	85.91
Bra032061.1-P	Field mustard	nucleus	53.62	64.01
VIT_04s0008g07340.t01	Wine grape	nucleus, plastid	63.77	63.4
Solyc12g096500.1.1	Tomato	nucleus	52.46	50.56
PGSC0003DMT400075520	Potato	nucleus	50.72	49.02
PGSC0003DMT400067657	Potato	nucleus	48.99	48.7
Solyc08g006530.2.1	Tomato	nucleus	48.99	48.42
Bra020425.1-P	Field mustard	nucleus, plastid	46.38	46.78
Bra002709.1-P	Field mustard	nucleus	27.83	44.04
Bra023541.1-P	Field mustard	nucleus	37.39	40.95
Bra021464.1-P	Field mustard	nucleus	37.97	40.81
Bra001043.1-P	Field mustard	nucleus	26.09	39.47
Bra008668.1-P	Field mustard	nucleus	38.26	39.17
Bra008669.1-P	Field mustard	nucleus	38.55	36.34
TraesCS6D01G269500.1	Wheat	nucleus	38.55	36.04
TraesCS6B01G319500.1	Wheat	nucleus	38.26	35.68
TraesCS6A01G289400.1	Wheat	nucleus	37.97	35.5
EER88227	Sorghum	nucleus	39.13	32.85
Os06t0275000-01	Rice	mitochondrion	37.1	32.41
Zm00001d045735_P002	Maize	extracellular, vacuole	40.0	32.24
OQU85473	Sorghum	nucleus	33.04	31.15
TraesCS7B01G118300.1	Wheat	nucleus	34.49	31.07
TraesCS7D01G213000.2	Wheat	nucleus	34.2	30.81
TraesCS7A01G211300.1	Wheat	nucleus	33.91	30.39
Bra030070.1-P	Field mustard	nucleus	20.29	22.73
Bra001264.1-P	Field mustard	nucleus	22.03	21.65
Bra004423.1-P	Field mustard	nucleus	20.58	21.26
Bra020709.1-P	Field mustard	nucleus	21.45	21.08
Bra029666.1-P	Field mustard	nucleus	23.19	20.73
Bra040020.1-P	Field mustard	nucleus	21.74	20.49
Bra041077.1-P	Field mustard	nucleus	23.48	19.85
Bra010908.1-P	Field mustard	nucleus	23.77	19.62
Bra037499.1-P	Field mustard	nucleus	19.42	19.42
Bra023858.1-P	Field mustard	nucleus	20.29	18.13

Protein Annotations

MapMan:15.5.1.2	EnsemblPlantsGene:Bra036528	EnsemblPlants:Bra036528.1	EnsemblPlants:Bra036528.1-P	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	UniProt:M4F619	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF14	SMART:SM00336	UniParc:UPI0002541C7B
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

AT5G24930 (E=1e-088) ATCOL4, COL4 | zinc finger (B-box type) family protein

Coordinates

chrA09:+:1599722..1601288

Molecular Weight (calculated)

37323.6 Da

IEP (calculated)

6.239

GRAVY (calculated)

-0.452

Length

345 amino acids

Sequence
(BLAST)

001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSG
101: TDGSGKHTAV NFLNDCYFTD LDGNVSREEE EEEAASWLLP NPKTTAPAVP GDSPEMNTGQ GFMFPDLDLD YGTVDPKLES QEPNSSGTDG VVPVETRRVG
201: VPTVNENCYD LDFTGGSKGV ITYGHNCISH SVSSSSLEVG VVPDGGSVAD VSYPFGGPAT SGTDPVTQRA VPLTSAEREA RVMRYREKRK NRKFEKTIRY
301: ASRKAYAEMR PRIKGRFAKR TDTNESNDVV GHGGMFSGFG LVPTF

Best Arabidopsis Sequence Match ( AT5G24930.1 )
(BLAST)

001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF

Arabidopsis Description

COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.