Factsheet for Bra040020.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22125	Canola	nucleus	98.09	98.09
Bra001264.1-P	Field mustard	nucleus	85.25	88.89
AT3G07650.1	Thale cress	nucleus	86.89	85.48
Bra029666.1-P	Field mustard	nucleus	89.34	84.72
Bra020709.1-P	Field mustard	nucleus	68.31	71.23
Bra037499.1-P	Field mustard	nucleus	62.02	65.8
KRH17709	Soybean	nucleus	62.57	55.99
KRH72628	Soybean	nucleus	61.48	55.56
KRG89998	Soybean	nucleus	61.75	55.26
KRH16989	Soybean	nucleus	61.2	54.5
VIT_12s0057g01350.t01	Wine grape	nucleus	60.66	53.49
PGSC0003DMT400074143	Potato	nucleus	58.2	52.21
VIT_00s0194g00070.t01	Wine grape	nucleus	57.38	50.72
KXG19836	Sorghum	nucleus	56.28	50.12
Os06t0298200-01	Rice	nucleus	55.46	49.75
TraesCS7A01G218600.1	Wheat	nucleus	53.83	49.75
TraesCS7D01G220300.1	Wheat	nucleus	53.83	49.75
Os02t0724000-01	Rice	nucleus	55.19	49.63
PGSC0003DMT400013624	Potato	nucleus	55.46	49.15
Solyc05g020020.2.1	Tomato	nucleus	54.92	49.02
PGSC0003DMT400044878	Potato	nucleus	54.92	48.91
TraesCS6A01G286400.3	Wheat	nucleus	51.64	48.46
HORVU6Hr1G071950.2	Barley	nucleus	50.55	48.43
Solyc07g045180.2.1	Tomato	nucleus	55.19	48.33
TraesCS6D01G267100.1	Wheat	nucleus	51.37	47.96
TraesCS6B01G315400.1	Wheat	nucleus	50.55	47.44
Zm00001d051684_P007	Maize	nucleus	52.46	47.29
EES07342	Sorghum	nucleus	52.19	47.04
GSMUA_Achr7P20150_001	Banana	nucleus	52.19	46.36
Zm00001d045804_P003	Maize	nucleus	55.19	46.33
GSMUA_Achr3P04260_001	Banana	nucleus	53.01	46.19
Solyc12g006240.1.1	Tomato	nucleus	33.88	46.1
GSMUA_Achr5P22460_001	Banana	nucleus	48.91	45.78
GSMUA_Achr9P12860_001	Banana	nucleus	51.64	45.32
GSMUA_Achr10P...	Banana	nucleus	49.45	45.14
TraesCS7B01G125500.1	Wheat	cytosol, nucleus, plastid	41.53	45.1
GSMUA_Achr5P04270_001	Banana	nucleus	50.27	43.6
Zm00001d017885_P001	Maize	nucleus	46.17	36.66
Bra023858.1-P	Field mustard	nucleus	30.87	29.27
Bra030070.1-P	Field mustard	nucleus	23.22	27.6
Bra032061.1-P	Field mustard	nucleus	19.67	24.91
Bra023541.1-P	Field mustard	nucleus	20.77	24.13
Bra020425.1-P	Field mustard	nucleus, plastid	22.13	23.68
Bra041077.1-P	Field mustard	nucleus	26.23	23.53
Bra008668.1-P	Field mustard	nucleus	21.31	23.15
Bra010908.1-P	Field mustard	nucleus	25.96	22.73
Bra008669.1-P	Field mustard	nucleus	21.86	21.86
Bra004423.1-P	Field mustard	nucleus	19.95	21.86
Bra036528.1-P	Field mustard	nucleus	20.49	21.74
Bra009805.1-P	Field mustard	nucleus	20.77	21.65
Bra002709.1-P	Field mustard	nucleus	12.57	21.1
Bra021464.1-P	Field mustard	nucleus	18.31	20.87
Bra001043.1-P	Field mustard	nucleus	10.66	17.11

Protein Annotations

MapMan:15.5.1.2	EnsemblPlantsGene:Bra040020	EnsemblPlants:Bra040020.1	EnsemblPlants:Bra040020.1-P	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	UniProt:M4FFZ6	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF39	SMART:SM00336	UniParc:UPI0002544761	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

AT3G07650 (E=4e-162) COL9 | COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding

Coordinates

chrA01:-:27889557..27891110

Molecular Weight (calculated)

40452.6 Da

IEP (calculated)

6.124

GRAVY (calculated)

-0.647

Length

366 amino acids

Sequence
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SIHSANALSK RHSRTLVCER CNAHPATVRC VEERVSLCQN CDWSGHNNNN NSNSLSSHHK RQSISCYSGC
101: PSSSELASIW SFCSDLAGQS VCEQEIGMMN IDDDGQTNQN CNEDKKDVIV GSSSRLETSY AAHANSPFAK DIGVCEDDFY DNLGMDEVDL ALENYEELFG
201: TAFNSSGHLF GQCGIDSLFQ KHQAAPEGGN SVQPAESNDS FMSSKTEPII CYTSKPAHSN ISFSGVTGES CAGDFQECGA SSSMQLLGDP PWYPQTSQDN
301: NAFSHSVTRN NAVMRYKEKK KARKFDKTVR YASRKARADV RRRVKGRFIK AGEAYDYDPL TPTRSY

Best Arabidopsis Sequence Match ( AT3G07650.3 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY

Arabidopsis Description

COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.