Factsheet for GSMUA_Achr7P20150_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P18060_001
GSMUA_Achr4P19000_001
GSMUA_Achr5P14120_001
GSMUA_Achr8P14660_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	GSMUA_Achr11P...	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr2P18060_001	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr4P19000_001	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr5P14120_001	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr8P14660_001	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	76.94	79.05
GSMUA_Achr5P22460_001	Banana	nucleus	65.29	68.8
GSMUA_Achr3P04260_001	Banana	nucleus	67.23	65.95
GSMUA_Achr9P12860_001	Banana	nucleus	66.75	65.95
GSMUA_Achr5P04270_001	Banana	nucleus	64.56	63.03
Os02t0724000-01	Rice	nucleus	61.41	62.16
EES07342	Sorghum	nucleus	60.44	61.33
Os06t0298200-01	Rice	nucleus	59.22	59.8
HORVU6Hr1G071950.2	Barley	nucleus	55.1	59.42
KXG19836	Sorghum	nucleus	58.74	58.88
Zm00001d051684_P007	Maize	nucleus	58.01	58.87
TraesCS6B01G315400.1	Wheat	nucleus	55.34	58.46
TraesCS7A01G218600.1	Wheat	nucleus	55.83	58.08
TraesCS7D01G220300.1	Wheat	nucleus	55.58	57.83
TraesCS6A01G286400.3	Wheat	nucleus	54.61	57.69
TraesCS6D01G267100.1	Wheat	nucleus	54.85	57.65
VIT_12s0057g01350.t01	Wine grape	nucleus	57.52	57.11
VIT_00s0194g00070.t01	Wine grape	nucleus	57.28	57.0
KRG89998	Soybean	nucleus	56.07	56.48
Zm00001d045804_P003	Maize	nucleus	59.71	56.42
KRH72628	Soybean	nucleus	54.13	55.06
KRH17709	Soybean	nucleus	54.61	55.01
KRH16989	Soybean	nucleus	54.85	54.99
TraesCS7B01G125500.1	Wheat	cytosol, nucleus, plastid	44.17	54.01
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	11.65	53.93
Bra001264.1-P	Field mustard	nucleus	44.66	52.42
Bra040020.1-P	Field mustard	nucleus	46.36	52.19
CDY35952	Canola	nucleus	46.6	52.03
CDY22125	Canola	nucleus	46.12	51.91
CDY28029	Canola	nucleus	46.6	51.61
AT5G48250.1	Thale cress	nucleus	46.6	51.47
CDY07979	Canola	nucleus	43.93	51.42
CDX86318	Canola	nucleus	44.66	51.4
AT3G07650.1	Thale cress	nucleus	46.36	51.34
CDX85321	Canola	nucleus	44.66	51.25
CDY48743	Canola	nucleus	43.45	51.14
CDY05691	Canola	nucleus	42.96	51.01
Bra020709.1-P	Field mustard	nucleus	43.2	50.71
Bra037499.1-P	Field mustard	nucleus	42.23	50.43
Bra029666.1-P	Field mustard	nucleus	46.6	49.74
Zm00001d017885_P001	Maize	nucleus	55.34	49.46
PGSC0003DMT400013624	Potato	nucleus	49.51	49.39
PGSC0003DMT400074143	Potato	nucleus	48.3	48.77
Solyc05g020020.2.1	Tomato	nucleus	48.3	48.54
CDX74034	Canola	nucleus	45.39	47.95
PGSC0003DMT400044878	Potato	nucleus	47.33	47.45
Solyc07g045180.2.1	Tomato	nucleus	48.06	47.37
Solyc12g006240.1.1	Tomato	nucleus	29.37	44.98
GSMUA_Achr4P18680_001	Banana	nucleus	6.8	31.82
GSMUA_Achr7P16370_001	Banana	nucleus	19.42	27.4
GSMUA_Achr10P...	Banana	nucleus	20.39	26.33
GSMUA_Achr2P04960_001	Banana	nucleus	16.26	24.91
GSMUA_Achr9P19630_001	Banana	nucleus	19.42	24.02
GSMUA_Achr1P23420_001	Banana	nucleus	19.42	23.88
GSMUA_AchrUn_...	Banana	nucleus	18.2	23.51
GSMUA_Achr11P...	Banana	nucleus	18.69	22.13
GSMUA_Achr6P06130_001	Banana	nucleus	22.82	21.12
GSMUA_Achr3P08880_001	Banana	nucleus	20.87	21.08
GSMUA_Achr3P28130_001	Banana	nucleus	14.32	21.07
GSMUA_Achr10P...	Banana	nucleus	23.06	20.74
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	13.11	18.56
GSMUA_Achr11P...	Banana	nucleus	21.6	17.18

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr7G20150_001	EnsemblPlants:GSMUA_Achr7P20150_001
EnsemblPlants:GSMUA_Achr7T20150_001	InterPro:IPR000315	InterPro:IPR010402	UniProt:M0TJ52	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF39	SMART:SM00336	UniParc:UPI00029525B3	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

Putative Zinc finger protein CONSTANS-LIKE 10 [Source:GMGC_GENE;Acc:GSMUA_Achr7G20150_001]

Coordinates

chr7:-:23128437..23132579

Molecular Weight (calculated)

44995.0 Da

IEP (calculated)

4.748

GRAVY (calculated)

-0.590

Length

412 amino acids

Sequence
(BLAST)

001: MGRLCDFCTE QRSVVYCRSD AASLCLSCDR NIHSANALSR RHSRTLLCDR CTTQPAIVRC IEENASLCQN CDWNGHGGLA LTSEHKRQTI NCYSGCPSAA
101: EFSRIWSFFE FPDMEEPDFE KGLMTINENS VTNCWGPPED SSTANIGSTG KMNDIKAVDK ANPWVESSSA SGLNAMSCSA DRPAGSMDST TPKTSCPRTD
201: DVDFCKDDFY EGFTMGDADM TFENYEELFG ASHNLTGDLF DDAGIDSFFD MKENSATNSI CHGESTEEVK QMQATCGNAV SADPAMSNPE GNADSSLALP
301: GCQVQSTLSF SFSGVTGESS AGEYQDCGMS GMLLTGEPSC YHAGPGSSSL PTSNRESALI RYKEKKKTRK FEKKIRYASR KARADVRRRV KGRFVKAGEA
401: YDYDPLSETR SC

Best Arabidopsis Sequence Match ( AT5G48250.1 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CNAQPASVRC SDERVSLCQN CDWSGHDGKN STTTSHHKRQ TINCYSGCPS
101: SAELSSIWSF CMDLNISSAE ESACEQGMGL MTIDEDGTGE KSGVQKINVE QPETSSAAQG MDHSSVPENS SMAKELGVCE DDFNGNLISD EVDLALENYE
201: ELFGSAFNSS RYLFEHGGIG SLFEKDEAHE GSMQQPALSN NASADSFMTC RTEPIICYSS KPAHSNISFS GITGESNAGD FQDCGASSMK QLSREPQPWC
301: HPTAQDIIAS SHATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR VKGRFVKSGE AYDYDPMSPT RSY

Arabidopsis Description

COL10Zinc finger protein CONSTANS-LIKE 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.