Factsheet for GSMUA_Achr9P19630_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	65.47	62.64
GSMUA_AchrUn_...	Banana	nucleus	58.56	61.13
GSMUA_Achr1P23420_001	Banana	nucleus	61.26	60.9
GSMUA_Achr2P04960_001	Banana	nucleus	46.85	57.99
GSMUA_Achr7P16370_001	Banana	nucleus	49.25	56.16
GSMUA_Achr10P...	Banana	nucleus	52.25	54.55
GSMUA_Achr4P18680_001	Banana	nucleus	13.21	50.0
GSMUA_Achr3P28130_001	Banana	nucleus	33.63	40.0
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	32.43	37.11
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	9.01	33.71
GSMUA_Achr5P22460_001	Banana	nucleus	25.23	21.48
GSMUA_Achr10P...	Banana	nucleus	24.02	19.95
GSMUA_Achr7P20150_001	Banana	nucleus	24.02	19.42
GSMUA_Achr3P04260_001	Banana	nucleus	24.32	19.29
GSMUA_Achr9P12860_001	Banana	nucleus	23.72	18.94
GSMUA_Achr5P04270_001	Banana	nucleus	23.72	18.72
GSMUA_Achr6P06130_001	Banana	nucleus	23.72	17.75
GSMUA_Achr10P...	Banana	nucleus	24.32	17.69
GSMUA_Achr3P08880_001	Banana	nucleus	21.02	17.16
GSMUA_Achr11P...	Banana	nucleus	22.82	14.67

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr9G19630_001	EnsemblPlants:GSMUA_Achr9P19630_001
EnsemblPlants:GSMUA_Achr9T19630_001	InterPro:IPR000315	InterPro:IPR010402	UniProt:M0U1S0	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF14	SMART:SM00336	UniParc:UPI0002968E67
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

Putative Zinc finger protein CONSTANS-LIKE 2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G19630_001]

Coordinates

chr9:-:21758241..21759632

Molecular Weight (calculated)

35147.0 Da

IEP (calculated)

6.662

GRAVY (calculated)

-0.310

Length

333 amino acids

Sequence
(BLAST)

001: MAREAGGKEG YWTGLAARRC DSCKVAAALL YCRADAAYLC GGCDARVHEA NRLPSGHERV WLCAVCEQAP AVVTCKADAA ALCESCDADI HSANPLARRH
101: ERVPIVPFLE PLAAHVKPSS AAAAFPFGAA VCAGDGNNEE DENDAGADAS WILPNLGHAH SKGLTGAPDL KSADYFFSDA AGVNGGAPPL PSFLPPDAGV
201: EIDFSPSEPS YSTHTTFSMS HSASSSEAGV VPDGSGATTD VTNPHGGVPE KAAAQMDREA RVMRYREKRK SRRFEKTIRY ASRKAYAETR PRIKGRFAKR
301: KDIEAEVDRI YSAAAAAAAA LMADTGYGVV PSF

Best Arabidopsis Sequence Match ( AT3G02380.1 )
(BLAST)

001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF

Arabidopsis Description

COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.