Factsheet for GSMUA_Achr1P23420_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	73.13	76.8
GSMUA_Achr9P19630_001	Banana	nucleus	60.9	61.26
GSMUA_Achr11P...	Banana	nucleus	60.0	57.76
GSMUA_Achr7P16370_001	Banana	nucleus	48.96	56.16
GSMUA_Achr2P04960_001	Banana	nucleus	44.48	55.39
GSMUA_Achr10P...	Banana	nucleus	49.85	52.35
GSMUA_Achr4P18680_001	Banana	nucleus	12.84	48.86
GSMUA_Achr3P28130_001	Banana	nucleus	33.43	40.0
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	33.43	38.49
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	7.46	28.09
GSMUA_Achr10P...	Banana	nucleus	23.88	19.95
GSMUA_Achr3P04260_001	Banana	nucleus	24.48	19.52
GSMUA_Achr5P22460_001	Banana	nucleus	22.69	19.44
GSMUA_Achr9P12860_001	Banana	nucleus	24.18	19.42
GSMUA_Achr7P20150_001	Banana	nucleus	23.88	19.42
GSMUA_Achr5P04270_001	Banana	nucleus	23.58	18.72
GSMUA_Achr10P...	Banana	nucleus	23.88	17.47
GSMUA_Achr6P06130_001	Banana	nucleus	22.99	17.3
GSMUA_Achr3P08880_001	Banana	nucleus	20.0	16.42
GSMUA_Achr11P...	Banana	nucleus	22.09	14.29

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr1G23420_001	EnsemblPlants:GSMUA_Achr1P23420_001
EnsemblPlants:GSMUA_Achr1T23420_001	InterPro:IPR000315	InterPro:IPR010402	UniProt:M0S2E9	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF14	SMART:SM00336	UniParc:UPI000296EA16
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

Putative Zinc finger protein CONSTANS-LIKE 5 [Source:GMGC_GENE;Acc:GSMUA_Achr1G23420_001]

Coordinates

chr1:-:17762565..17764293

Molecular Weight (calculated)

35813.2 Da

IEP (calculated)

7.336

GRAVY (calculated)

-0.309

Length

335 amino acids

Sequence
(BLAST)

001: MVSAKGGYWS GIGARRCDSC KSGPALVFCR ADEAYLCGAC DARVHGTGAR HERVWVCEVC EQAPASVTCK ADAAALCVTC DADIHSANPL ALRHERAPVV
101: PFLEPLRPRS AATGFPFGVA AADEEASEAP SWLLPIPCAK GKSMDHFFSD VDPYLNLEYA TSIDARLQQT DGVVPVDAKD ASRDGGAPPP GPFLPIDGTF
201: ELDFVGSKPS YSPYTADSLS HSVSSLEFGV VPDGSGGIAK GTKADATGPN YGGGGGRAAD REARVMRYRE KRKNRRFEKT IRYASRKAYA ETRPRIKGRF
301: VKRSEIEPEE VVRTYSPAVV AALMADPGYG VVPSF

Best Arabidopsis Sequence Match ( AT5G57660.1 )
(BLAST)

001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF

Arabidopsis Description

COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.