Factsheet for GSMUA_Achr6P06130_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P10450_001
GSMUA_Achr6P03790_001
GSMUA_Achr6P16620_001
GSMUA_Achr7P08700_001
GSMUA_Achr9P13880_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28050.1	GSMUA_Achr1P10450_001	AT3G21150.1	21798944
AT1G28050.1	GSMUA_Achr6P03790_001	AT3G21150.1	21798944
AT1G28050.1	GSMUA_Achr7P08700_001	AT3G21150.1	21798944
AT1G28050.1	GSMUA_Achr9P13880_001	AT3G21150.1	21798944
AT1G28050.1	GSMUA_AchrUn_...	AT3G21150.1	21798944
AT1G28050.1	GSMUA_Achr10P...	AT3G48590.1	17138697
AT1G28050.1	GSMUA_Achr6P16620_001	AT3G48590.1	17138697
AT1G28050.1	GSMUA_Achr10P...	AT5G63470.1	17138697
AT1G28050.1	GSMUA_Achr6P16620_001	AT5G63470.1	17138697
AT2G33500.1	GSMUA_Achr10P...	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	43.6	42.36
TraesCS7B01G161500.1	Wheat	nucleus	46.29	42.21
TraesCS7D01G264300.1	Wheat	nucleus	46.07	41.92
TraesCS7A01G263500.1	Wheat	nucleus	45.39	41.22
Os08t0536300-01	Rice	nucleus	44.94	40.98
EES14176	Sorghum	nucleus	44.72	40.61
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	8.09	40.45
CDY15696	Canola	nucleus	26.07	40.14
GSMUA_Achr11P...	Banana	nucleus	45.62	39.19
Zm00001d031662_P001	Maize	nucleus	42.25	38.45
Bra030070.1-P	Field mustard	nucleus	26.29	37.99
CDY11755	Canola	nucleus	31.24	35.37
CDY68819	Canola	nucleus	30.56	35.14
CDY30385	Canola	nucleus	30.56	35.14
HORVU0Hr1G021050.5	Barley	cytosol	33.26	34.99
CDX90119	Canola	nucleus	31.46	33.41
Bra010908.1-P	Field mustard	nucleus	31.24	33.25
Bra041077.1-P	Field mustard	nucleus	30.34	33.09
VIT_01s0146g00360.t01	Wine grape	nucleus	34.38	32.62
CDY66639	Canola	nucleus	29.21	32.26
AT2G33500.1	Thale cress	nucleus	28.76	31.84
KRH06865	Soybean	nucleus	27.19	31.76
KRG94656	Soybean	nucleus	27.19	31.43
Solyc05g024010.2.1	Tomato	nucleus	31.91	31.42
VIT_14s0068g01380.t01	Wine grape	nucleus	31.46	31.18
PGSC0003DMT400065377	Potato	nucleus	31.24	30.68
AT1G28050.1	Thale cress	nucleus	29.21	30.02
CDY48428	Canola	nucleus	17.08	28.15
GSMUA_Achr7P16370_001	Banana	nucleus	17.3	26.37
GSMUA_Achr4P18680_001	Banana	nucleus	4.94	25.0
GSMUA_Achr3P08880_001	Banana	nucleus	22.92	25.0
GSMUA_Achr10P...	Banana	nucleus	17.75	24.76
GSMUA_AchrUn_...	Banana	nucleus	17.3	24.14
GSMUA_Achr9P19630_001	Banana	nucleus	17.75	23.72
GSMUA_Achr2P04960_001	Banana	nucleus	14.16	23.42
GSMUA_Achr5P04270_001	Banana	nucleus	22.02	23.22
GSMUA_Achr3P04260_001	Banana	nucleus	21.8	23.1
GSMUA_Achr1P23420_001	Banana	nucleus	17.3	22.99
GSMUA_Achr7P20150_001	Banana	nucleus	21.12	22.82
GSMUA_Achr5P22460_001	Banana	nucleus	20.0	22.76
GSMUA_Achr9P12860_001	Banana	nucleus	20.9	22.3
GSMUA_Achr11P...	Banana	nucleus	17.3	22.13
GSMUA_Achr10P...	Banana	nucleus	19.33	21.45
GSMUA_Achr3P28130_001	Banana	nucleus	11.91	18.93
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	12.13	18.56

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr6G06130_001	EnsemblPlants:GSMUA_Achr6P06130_001
EnsemblPlants:GSMUA_Achr6T06130_001	InterPro:IPR000315	InterPro:IPR010402	UniProt:M0T4L1	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF20	SMART:SM00336	UniParc:UPI000296C4F0	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

Putative Zinc finger protein CONSTANS-LIKE 15 [Source:GMGC_GENE;Acc:GSMUA_Achr6G06130_001]

Coordinates

chr6:+:4122043..4126352

Molecular Weight (calculated)

49158.1 Da

IEP (calculated)

6.242

GRAVY (calculated)

-0.685

Length

445 amino acids

Sequence
(BLAST)

001: MGVEDVEGGG RRKEGLPCDH CGEAATAVLY CRADAARLCL ACDADVHAAN ALSQRHTRAP ICDSCAAAPA VALCAADGLA LCAACDDDTH AAFGPSSHPR
101: TAIESFSGSL PAIELAAAWG FDLASKIHQS CLPAEFTSVD DWFALDATPA VDPSFQELYV PCAKRHKSSS ATGGKGRQAL LRQLMELVAR ESEGSCKWRQ
201: TTPIKKNDHR EDEEEEEEKG RGTEQMGYTS LLMMEPSARA ALKESDRIME EENLVWDHDH IDHAAQVWDF DSGRTRNRSE YSSLEVGFGT NSNGFMIKSY
301: SELLTESSLG ATNVLEDIYD TSCLSSNERK KVDVTSRWHK NTRNAASQGS STFHGKRLDM ARPVDPSHDS ETAGETKEIF GEPPINLKND TDSNFLSQNR
401: GNAVLRYKEK RKNRRYDKHI RYESRKLRAD SRKRVKGRFV KSTEA

Best Arabidopsis Sequence Match ( AT1G28050.1 )
(BLAST)

001: MSSSERVPCD FCGERTAVLF CRADTAKLCL PCDQQVHTAN LLSRKHVRSQ ICDNCGNEPV SVRCFTDNLI LCQECDWDVH GSCSVSDAHV RSAVEGFSGC
101: PSALELAALW GLDLEQGRKD EENQVPMMAM MMDNFGMQLD SWVLGSNELI VPSDTTFKKR GSCGSSCGRY KQVLCKQLEE LLKSGVVGGD GDDGDRDRDC
201: DREGACDGDG DGEAGEGLMV PEMSERLKWS RDVEEINGGG GGGVNQQWNA TTTNPSGGQS SQIWDFNLGQ SRGPEDTSRV EAAYVGKGAA SSFTINNFVD
301: HMNETCSTNV KGVKEIKKDD YKRSTSGQVQ PTKSESNNRP ITFGSEKGSN SSSDLHFTEH IAGTSCKTTR LVATKADLER LAQNRGDAMQ RYKEKRKTRR
401: YDKTIRYESR KARADTRLRV RGRFVKASEA PYP

Arabidopsis Description

COL15Zinc finger protein CONSTANS-LIKE 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7E8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.