Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 85.79 | 84.02 |
| PGSC0003DMT400039470 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 73.16 | 60.43 |
| Bra018046.1-P | Field mustard | nucleus | 70.0 | 60.18 |
| Solyc03g110860.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 72.63 | 60.0 |
| Solyc06g072040.1.1 | Tomato | nucleus | 72.63 | 59.48 |
| VIT_17s0000g01130.t01 | Wine grape | nucleus | 77.37 | 57.87 |
| AT3G48590.1 | Thale cress | nucleus | 70.53 | 57.27 |
| KRH63772 | Soybean | nucleus | 66.32 | 56.0 |
| KRH54177 | Soybean | nucleus | 67.37 | 55.9 |
| AT5G63470.1 | Thale cress | plastid | 73.16 | 55.6 |
| TraesCS4D01G223400.1 | Wheat | nucleus | 65.79 | 51.65 |
| HORVU4Hr1G062890.2 | Barley | nucleus | 65.26 | 51.45 |
| TraesCS4A01G081000.1 | Wheat | nucleus | 65.26 | 51.45 |
| TraesCS4B01G223000.1 | Wheat | nucleus | 65.26 | 51.24 |
| Os03t0251350-00 | Rice | nucleus | 64.74 | 50.0 |
| Bra038636.1-P | Field mustard | nucleus, plastid | 71.05 | 49.63 |
| Zm00001d028432_P001 | Maize | nucleus | 63.68 | 49.39 |
| KXG39763 | Sorghum | nucleus | 63.68 | 48.99 |
| GSMUA_Achr3P00060_001 | Banana | mitochondrion, plastid | 26.32 | 47.62 |
| GSMUA_Achr4P03920_001 | Banana | nucleus | 32.11 | 44.85 |
| CDY48146 | Canola | plastid | 61.58 | 44.32 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus | 28.95 | 43.65 |
| GSMUA_Achr4P13170_001 | Banana | nucleus | 32.63 | 42.47 |
| GSMUA_Achr3P11990_001 | Banana | nucleus | 32.11 | 38.36 |
| GSMUA_Achr11P... | Banana | cytosol | 50.0 | 37.4 |
| GSMUA_Achr1P19420_001 | Banana | nucleus | 34.21 | 33.33 |
| GSMUA_Achr5P26790_001 | Banana | cytosol | 38.42 | 32.59 |
| GSMUA_Achr3P23600_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 38.95 | 28.68 |
| GSMUA_Achr11P... | Banana | cytosol | 45.79 | 28.34 |
| GSMUA_Achr9P11550_001 | Banana | cytosol, nucleus, plasma membrane | 50.0 | 13.93 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P16620_001 | EnsemblPlants:GSMUA_Achr6T16620_001 | EnsemblPlantsGene:GSMUA_Achr6G16620_001 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 |
| InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF71 | PFAM:PF00808 |
| SEG:seg | SUPFAM:SSF47113 | UniParc:UPI000295D208 | UniProt:M0T7L0 | MapMan:15.5.51.3 | : |
Description
Nuclear transcription factor Y subunit C-4 [Source:GMGC_GENE;Acc:GSMUA_Achr6G16620_001]
Coordinates
chr6:-:11068219..11068791
Molecular Weight (calculated)
20805.9 Da
IEP (calculated)
4.709
GRAVY (calculated)
-0.357
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MFWNYQRQEI EQATDFKNHQ LPLARIKKIM KADEDVRMIS AEAPILFAKA CELFILELTI RSWLHAEENK RRTLQKNDIA AAVSQTEIFD FLVDIVPREE
101: VKEEGLGLAG GGGVGGAAAG VPYYYPPMGQ PAPPRVMMGQ PAVAGIDPSM YAQQPAQAWQ PMWHQGLSED GSGQSLDGPG YAAPPPPGSQ
101: VKEEGLGLAG GGGVGGAAAG VPYYYPPMGQ PAPPRVMMGQ PAVAGIDPSM YAQQPAQAWQ PMWHQGLSED GSGQSLDGPG YAAPPPPGSQ
001: MDNNNNNNNQ QPPPTSVYPP GSAVTTVIPP PPSGSASIVT GGGATYHHLL QQQQQQLQMF WTYQRQEIEQ VNDFKNHQLP LARIKKIMKA DEDVRMISAE
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG
Arabidopsis Description
NFYC4NF-YC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UJL4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.