Factsheet for HORVU4Hr1G062890.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G021050.5
HORVU0Hr1G022380.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48590.1	HORVU0Hr1G021050.5	AT1G28050.1	17138697
AT3G48590.1	HORVU0Hr1G022380.1	AT5G15840.1	17138697
AT5G63470.1	HORVU0Hr1G021050.5	AT1G28050.1	17138697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G081000.1	Wheat	nucleus	98.76	98.76
TraesCS4D01G223400.1	Wheat	nucleus	98.76	98.35
TraesCS4B01G223000.1	Wheat	nucleus	98.76	98.35
Os03t0251350-00	Rice	nucleus	90.87	89.02
KXG39763	Sorghum	nucleus	87.97	85.83
Zm00001d028432_P001	Maize	nucleus	87.14	85.71
GSMUA_Achr6P16620_001	Banana	cytosol	51.45	65.26
GSMUA_Achr10P...	Banana	nucleus	52.28	64.95
CDY05857	Canola	nucleus	55.19	60.18
Bra018046.1-P	Field mustard	nucleus	54.77	59.73
CDY08084	Canola	nucleus	54.77	59.73
PGSC0003DMT400039470	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	56.43	59.13
Solyc06g072040.1.1	Tomato	nucleus	56.85	59.05
Solyc03g110860.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	56.02	58.7
AT3G48590.1	Thale cress	nucleus	56.43	58.12
KRH63772	Soybean	nucleus	53.94	57.78
KRH54177	Soybean	nucleus	54.77	57.64
AT5G63470.1	Thale cress	plastid	58.09	56.0
VIT_17s0000g01130.t01	Wine grape	nucleus	56.85	53.94
Bra038636.1-P	Field mustard	nucleus, plastid	56.43	50.0
CDX84419	Canola	plastid	56.02	47.7
HORVU6Hr1G032200.1	Barley	nucleus	50.21	46.54
CDY66668	Canola	plastid	52.7	46.52
CDY48146	Canola	plastid	49.38	45.08
HORVU7Hr1G108370.1	Barley	nucleus	45.64	42.31
HORVU7Hr1G048760.3	Barley	plastid	44.4	41.15
HORVU1Hr1G081010.1	Barley	mitochondrion	22.41	39.71
HORVU7Hr1G082930.1	Barley	nucleus	22.41	13.27

Protein Annotations

EMBL:AK367929	EnsemblPlants:HORVU4Hr1G062890.2	EnsemblPlantsGene:HORVU4Hr1G062890	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982
InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR10252	PANTHER:PTHR10252:SF67	PFAM:PF00808
SEG:seg	SUPFAM:SSF47113	UniParc:UPI00020072B4	UniProt:F2DVL1	MapMan:15.5.51.3	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DVL1]

Coordinates

chrchr4H:+:526036835..526039220

Molecular Weight (calculated)

25628.2 Da

IEP (calculated)

5.275

GRAVY (calculated)

-0.376

Length

241 amino acids

Sequence
(BLAST)

001: MENHQLPYTT QPPATGASGA PVPGVPGPPP VPHHHLLQQQ QAQLQAFWAY QRQEAERASA SDFKNHQLPL ARIKKIMKAD EDVRMISAEA PVLFAKACEL
101: FILELTIRSW LHAEENKRRT LQRNDVAAAI ARTDVFDFLV DIVPREEAKE EPGSAALGFV AGGVGAAGGG PAAGLPYYYP PMGQPAAPMM PAWHVPAWEP
201: AWQQGGADVD QGAGSFGEEG QGFTGGHGGS AGFPPGPPSS E

Best Arabidopsis Sequence Match ( AT5G63470.1 )
(BLAST)

001: MDNNNNNNNQ QPPPTSVYPP GSAVTTVIPP PPSGSASIVT GGGATYHHLL QQQQQQLQMF WTYQRQEIEQ VNDFKNHQLP LARIKKIMKA DEDVRMISAE
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG

Arabidopsis Description

NFYC4NF-YC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UJL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.