Factsheet for HORVU7Hr1G108370.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G463100.1	Wheat	nucleus	80.38	81.32
TraesCS7A01G475400.1	Wheat	nucleus	79.23	80.16
TraesCS7B01G377500.1	Wheat	nucleus	78.46	79.69
Os06t0667100-01	Rice	cytosol, nucleus, plastid	73.85	76.8
EER88787	Sorghum	nucleus	72.31	73.73
Zm00001d046967_P001	Maize	nucleus	70.0	73.39
Zm00001d036648_P001	Maize	extracellular	68.46	72.65
HORVU6Hr1G032200.1	Barley	nucleus	68.46	68.46
Bra003334.1-P	Field mustard	nucleus	41.54	58.7
AT1G56170.2	Thale cress	nucleus	43.85	57.29
CDX67737	Canola	nucleus	40.77	56.38
KRH13746	Soybean	nucleus	53.85	52.24
GSMUA_Achr11P...	Banana	cytosol	50.38	51.57
VIT_19s0085g00520.t01	Wine grape	cytosol	53.08	51.3
KRH43702	Soybean	nucleus	53.46	51.29
HORVU4Hr1G062890.2	Barley	nucleus	42.31	45.64
GSMUA_Achr5P26790_001	Banana	cytosol	38.85	45.09
HORVU7Hr1G048760.3	Barley	plastid	42.69	42.69
GSMUA_Achr11P...	Banana	cytosol	45.38	38.44
GSMUA_Achr3P23600_001	Banana	cytosol, mitochondrion, nucleus, plastid	38.08	38.37
HORVU1Hr1G081010.1	Barley	mitochondrion	19.23	36.76
HORVU7Hr1G082930.1	Barley	nucleus	17.69	11.3

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	UniProt:A0A287XRK0	InterPro:CBFA_NFYB_domain	ncoils:Coil	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628	GO:GO:0009791
GO:GO:0046982	GO:GO:0048579	EnsemblPlantsGene:HORVU7Hr1G108370	EnsemblPlants:HORVU7Hr1G108370.1	InterPro:Histone-fold	InterPro:IPR009072
PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF74	SUPFAM:SSF47113	UniParc:UPI000B46C1E4	SEG:seg

Description

No Description!

Coordinates

chrchr7H:+:625085894..625088505

Molecular Weight (calculated)

28622.6 Da

IEP (calculated)

4.393

GRAVY (calculated)

-0.596

Length

260 amino acids

Sequence
(BLAST)

001: MEPSSQPQPA IGDVAGGSQV YPSSACPPAA TVAAAPGVAP AGSQPAAPFP ANPAQLNAQN QLIYEQAQQC NQQLQQQQQS QLQQFLAERL SEIEQDTDFK
101: NHTLPLARIK KIMRADEDVR MISAEAPVVF AKACEIFILE LTMRSWMHTE ENKRRTLQKN DLAAAITRTD VYDFLVDIFP MDETREEGIG LPRVGQPPLG
201: APADAYPNYY PQQLQQVPGA AMVYGGQQVP QGHPMYVWQD PQEQQQQGRH ADAEQQSESG

Best Arabidopsis Sequence Match ( AT1G56170.1 )
(BLAST)

001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES

Arabidopsis Description

NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.