CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036648_P001	Maize	extracellular	89.02	92.65
Zm00001d046967_P001	Maize	nucleus	89.8	92.34
Os06t0667100-01	Rice	cytosol, nucleus, plastid	79.61	81.2
TraesCS7D01G463100.1	Wheat	nucleus	75.69	75.1
KXG24590	Sorghum	nucleus	74.12	74.7
TraesCS7A01G475400.1	Wheat	nucleus	74.12	73.54
TraesCS7B01G377500.1	Wheat	nucleus	72.94	72.66
HORVU7Hr1G108370.1	Barley	nucleus	73.73	72.31
AT1G56170.2	Thale cress	nucleus	49.41	63.32
Bra003334.1-P	Field mustard	nucleus	45.1	62.5
CDX67737	Canola	nucleus	44.31	60.11
EER96945	Sorghum	nucleus	47.45	59.9
EES15444	Sorghum	nucleus	46.67	59.2
KRH43702	Soybean	nucleus	59.22	55.72
KRH13746	Soybean	nucleus	58.43	55.6
GSMUA_Achr11P...	Banana	cytosol	55.29	55.51
VIT_19s0085g00520.t01	Wine grape	cytosol	57.65	54.65
TraesCS7D01G462200.1	Wheat	nucleus	56.08	54.58
TraesCS3D01G102500.1	Wheat	nucleus	49.02	53.65
TraesCS7B01G377200.1	Wheat	nucleus	51.76	53.23
TraesCS7D01G462100.1	Wheat	nucleus	40.78	52.79
TraesCS7A01G474800.1	Wheat	nucleus	48.24	52.56
TraesCS7B01G376500.1	Wheat	nucleus	46.67	52.19
TraesCS7B01G377000.1	Wheat	nucleus	47.45	51.93
GSMUA_Achr5P26790_001	Banana	cytosol	43.53	49.55
KXG39763	Sorghum	nucleus	44.31	45.75
GSMUA_Achr11P...	Banana	cytosol	52.94	43.97
EES13127	Sorghum	mitochondrion	21.57	42.97
GSMUA_Achr3P23600_001	Banana	cytosol, mitochondrion, nucleus, plastid	42.75	42.25
KXG24666	Sorghum	nucleus	33.73	38.39
OQU83181	Sorghum	nucleus	17.65	26.32
EES15819	Sorghum	nucleus	19.61	12.35
EES14613	Sorghum	nucleus	19.22	10.63
EES16679	Sorghum	nucleus	17.65	9.7

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	EntrezGene:8061586	UniProt:C5Z7N4	InterPro:CBFA_NFYB_domain	EnsemblPlants:EER88787
ProteinID:EER88787	ProteinID:EER88787.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0007275
GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:0046982	GO:GO:0048579	InterPro:Histone-fold
InterPro:IPR009072	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF74	EnsemblPlantsGene:SORBI_3010G221400	SUPFAM:SSF47113
UniParc:UPI0001A88F41	RefSeq:XP_002437420.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:56411273..56415563

Molecular Weight (calculated)

28395.5 Da

IEP (calculated)

4.916

GRAVY (calculated)

-0.584

Length

255 amino acids

Sequence
(BLAST)

001: MEPSSQPQPA MGVAPGGSQV YPASAYPPAA TVAAPAVASA GLQSAQPFQA NPAHTSAQHQ IVYQQAQQFH QQLQQQQQQQ LQQFWAERMA EIEATTDFKN
101: HNLPLARIKK IMKADEDVRM ISAEAPVVFA KACEIFILEL TLRSWMHTEE NKRRTLQKND IAAAITRTDI YDFLVDIVPR DEMKEDGVGL PRAGLPPMGA
201: PADAYPYYYM QQQQVPGPGM VYGAQQNHPV TYLWQEPQEQ QGQAPEEQQS LHESG

Best Arabidopsis Sequence Match ( AT1G56170.1 )
(BLAST)

001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES

Arabidopsis Description

NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.