Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
20408568
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046967_P001 | Maize | nucleus | 93.06 | 91.94 |
| EER88787 | Sorghum | nucleus | 92.65 | 89.02 |
| Os06t0667100-01 | Rice | cytosol, nucleus, plastid | 77.96 | 76.4 |
| TraesCS7D01G463100.1 | Wheat | nucleus | 73.06 | 69.65 |
| HORVU7Hr1G108370.1 | Barley | nucleus | 72.65 | 68.46 |
| Zm00001d024230_P001 | Maize | nucleus, plastid | 69.8 | 68.13 |
| TraesCS7A01G475400.1 | Wheat | nucleus | 71.43 | 68.09 |
| TraesCS7B01G377500.1 | Wheat | nucleus | 70.2 | 67.19 |
| Bra003334.1-P | Field mustard | nucleus | 44.49 | 59.24 |
| AT1G56170.2 | Thale cress | nucleus | 47.76 | 58.79 |
| CDX67737 | Canola | nucleus | 43.67 | 56.91 |
| Zm00001d020874_P001 | Maize | extracellular | 44.9 | 55.0 |
| KRH43702 | Soybean | nucleus | 60.0 | 54.24 |
| KRH13746 | Soybean | nucleus | 58.78 | 53.73 |
| GSMUA_Achr11P... | Banana | cytosol | 55.51 | 53.54 |
| VIT_19s0085g00520.t01 | Wine grape | cytosol | 58.78 | 53.53 |
| Zm00001d031310_P001 | Maize | nucleus | 42.86 | 52.5 |
| TraesCS7B01G377200.1 | Wheat | nucleus | 51.84 | 51.21 |
| TraesCS7D01G462200.1 | Wheat | nucleus | 54.69 | 51.15 |
| TraesCS7D01G462100.1 | Wheat | nucleus | 40.82 | 50.76 |
| TraesCS7B01G376500.1 | Wheat | nucleus | 46.94 | 50.44 |
| Zm00001d052838_P001 | Maize | nucleus | 40.82 | 49.51 |
| TraesCS3D01G102500.1 | Wheat | nucleus | 46.94 | 49.36 |
| TraesCS7A01G474800.1 | Wheat | nucleus | 46.53 | 48.72 |
| TraesCS7B01G377000.1 | Wheat | nucleus | 45.31 | 47.64 |
| GSMUA_Achr5P26790_001 | Banana | cytosol | 41.63 | 45.54 |
| Zm00001d028432_P001 | Maize | nucleus | 44.9 | 44.9 |
| GSMUA_Achr11P... | Banana | cytosol | 52.65 | 42.02 |
| Zm00001d026648_P001 | Maize | mitochondrion | 21.63 | 41.73 |
| GSMUA_Achr3P23600_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 41.63 | 39.53 |
| Zm00001d005993_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 39.59 | 34.77 |
| Zm00001d023466_P001 | Maize | cytosol, mitochondrion, nucleus | 17.55 | 9.79 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.3 | UniProt:A0A1D6LQ42 | ProteinID:AQK81605.1 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF74 |
| SUPFAM:SSF47113 | UniParc:UPI000844FBE0 | EnsemblPlantsGene:Zm00001d036648 | EnsemblPlants:Zm00001d036648_P001 | EnsemblPlants:Zm00001d036648_T001 | SEG:seg |
Description
CCAAT-HAP5-transcription factor 53Nuclear transcription factor Y subunit C-2
Coordinates
chr6:-:96210403..96211140
Molecular Weight (calculated)
27548.6 Da
IEP (calculated)
4.916
GRAVY (calculated)
-0.551
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVAAGGSQV YPASAYPPAA TVAPPAVASA GLQSVQPFPA NPAHMSAQHQ IVYQQAQQFH QQLQQQQQQQ LQQFWVERMT EIEATADFRN HNLPLARIKK
101: IMKADEDVRM ISAEAPVVFA KACEIFILEL TLRSWMHTEE NKRRTLQKND IAAAITRTDI YDFLVDIVPR DEMKDDGIGL PRPGLPPMGA PADAYPYYYM
201: PQQQVPGPGM VYGAQQGHPV TYLWQDPQEQ QEQAPEEQQS LHERD
101: IMKADEDVRM ISAEAPVVFA KACEIFILEL TLRSWMHTEE NKRRTLQKND IAAAITRTDI YDFLVDIVPR DEMKDDGIGL PRPGLPPMGA PADAYPYYYM
201: PQQQVPGPGM VYGAQQGHPV TYLWQDPQEQ QEQAPEEQQS LHERD
001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
Arabidopsis Description
NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.