Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003334.1-P | Field mustard | nucleus | 43.7 | 60.33 |
| AT1G56170.2 | Thale cress | nucleus | 46.06 | 58.79 |
| VIT_19s0085g00520.t01 | Wine grape | cytosol | 61.42 | 57.99 |
| CDX67737 | Canola | nucleus | 42.91 | 57.98 |
| KXG24590 | Sorghum | nucleus | 57.09 | 57.31 |
| Os06t0667100-01 | Rice | cytosol, nucleus, plastid | 56.3 | 57.2 |
| Os02t0170500-01 | Rice | nucleus | 58.27 | 57.14 |
| HORVU6Hr1G032200.1 | Barley | nucleus | 58.27 | 56.92 |
| TraesCS6D01G147300.1 | Wheat | nucleus | 56.69 | 56.25 |
| Zm00001d046967_P001 | Maize | nucleus | 54.72 | 56.05 |
| GSMUA_Achr4P03920_001 | Banana | nucleus | 29.92 | 55.88 |
| TraesCS6A01G157900.1 | Wheat | nucleus | 56.3 | 55.86 |
| Zm00001d036648_P001 | Maize | extracellular | 53.54 | 55.51 |
| GSMUA_Achr5P26790_001 | Banana | cytosol | 48.82 | 55.36 |
| KRH43702 | Soybean | nucleus | 59.06 | 55.35 |
| EER88787 | Sorghum | nucleus | 55.51 | 55.29 |
| KRH13746 | Soybean | nucleus | 58.27 | 55.22 |
| Zm00001d024230_P001 | Maize | nucleus, plastid | 54.33 | 54.98 |
| TraesCS7D01G463100.1 | Wheat | nucleus | 55.12 | 54.47 |
| TraesCS7A01G475400.1 | Wheat | nucleus | 53.94 | 53.31 |
| TraesCS7B01G377500.1 | Wheat | nucleus | 53.54 | 53.12 |
| GSMUA_Achr3P00060_001 | Banana | mitochondrion, plastid | 21.65 | 52.38 |
| HORVU7Hr1G108370.1 | Barley | nucleus | 51.57 | 50.38 |
| GSMUA_Achr6P16620_001 | Banana | cytosol | 37.4 | 50.0 |
| TraesCS6B01G185700.1 | Wheat | cytosol | 56.69 | 49.48 |
| GSMUA_Achr3P23600_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 49.61 | 48.84 |
| GSMUA_Achr4P13170_001 | Banana | nucleus | 27.95 | 48.63 |
| GSMUA_Achr3P11990_001 | Banana | nucleus | 29.92 | 47.8 |
| GSMUA_Achr11P... | Banana | cytosol | 57.48 | 47.56 |
| GSMUA_Achr10P... | Banana | nucleus | 35.83 | 46.91 |
| TraesCS7D01G462100.1 | Wheat | nucleus | 35.43 | 45.69 |
| TraesCS3D01G102500.1 | Wheat | nucleus | 41.34 | 45.06 |
| TraesCS7B01G376500.1 | Wheat | nucleus | 40.16 | 44.74 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus | 22.05 | 44.44 |
| TraesCS7A01G474800.1 | Wheat | nucleus | 40.55 | 44.02 |
| TraesCS7B01G377200.1 | Wheat | nucleus | 42.52 | 43.55 |
| TraesCS7D01G462200.1 | Wheat | nucleus | 44.49 | 43.13 |
| TraesCS7B01G377000.1 | Wheat | nucleus | 39.37 | 42.92 |
| GSMUA_Achr1P19420_001 | Banana | nucleus | 31.1 | 40.51 |
| KXG24666 | Sorghum | nucleus | 31.89 | 36.16 |
| Os08t0206500-00 | Rice | nucleus | 34.25 | 30.85 |
| GSMUA_Achr9P11550_001 | Banana | cytosol, nucleus, plasma membrane | 42.13 | 15.69 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.3 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045893 | GO:GO:0046982 |
| EnsemblPlantsGene:GSMUA_Achr11G25640_001 | EnsemblPlants:GSMUA_Achr11P25640_001 | EnsemblPlants:GSMUA_Achr11T25640_001 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:M0RVE4 |
| PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF74 | SUPFAM:SSF47113 | UniParc:UPI0002962BDF | SEG:seg |
Description
core histone H2A/H2B/H3/H4, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G25640_001]
Coordinates
chr11:+:24725533..24728975
Molecular Weight (calculated)
27895.2 Da
IEP (calculated)
5.863
GRAVY (calculated)
-0.310
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQPPQPSQP VIGIVSGAAQ RAYAAPAYQP AAMVTGAQAV TGAMPHLTQL TSAYPINPVN LASPHQLVYQ QVQQFQHQQQ QQLQSFWTNQ MSEIEQAADF
101: KNHSLPLARV KKIMKAEEDV HMISADAPVV FAKACEMFIL ELTLRSWIHT EENKRRTLLK NDIAAAISGT DIFDFLVDIA PRDELNGDGL GLARAGAPAE
201: SIPYYYLPAS QMTGSGMNTG KPIGQTTRSV AYMWQQPQAQ QLPVQHLQQA TDGE
101: KNHSLPLARV KKIMKAEEDV HMISADAPVV FAKACEMFIL ELTLRSWIHT EENKRRTLLK NDIAAAISGT DIFDFLVDIA PRDELNGDGL GLARAGAPAE
201: SIPYYYLPAS QMTGSGMNTG KPIGQTTRSV AYMWQQPQAQ QLPVQHLQQA TDGE
001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
Arabidopsis Description
NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.