Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P03920_001 | Banana | nucleus | 61.03 | 87.5 |
| GSMUA_Achr3P11990_001 | Banana | nucleus | 69.74 | 85.53 |
| GSMUA_Achr4P13170_001 | Banana | nucleus | 58.97 | 78.77 |
| Os09t0480700-01 | Rice | nucleus | 36.92 | 42.86 |
| EER96945 | Sorghum | nucleus | 41.03 | 39.6 |
| Zm00001d020874_P001 | Maize | extracellular | 40.51 | 39.5 |
| EES15444 | Sorghum | nucleus | 40.51 | 39.3 |
| TraesCS7D01G237100.1 | Wheat | nucleus | 38.97 | 38.19 |
| TraesCS7B01G135000.1 | Wheat | nucleus | 38.97 | 38.19 |
| TraesCS7A01G239500.1 | Wheat | nucleus | 38.97 | 38.19 |
| GSMUA_Achr5P26790_001 | Banana | cytosol | 43.59 | 37.95 |
| TraesCS5A01G256500.1 | Wheat | nucleus | 39.49 | 37.93 |
| TraesCS5D01G265000.1 | Wheat | nucleus | 39.49 | 37.93 |
| Zm00001d031310_P001 | Maize | nucleus | 38.46 | 37.5 |
| TraesCS5B01G255900.1 | Wheat | nucleus | 38.97 | 37.44 |
| Os08t0496500-01 | Rice | nucleus | 37.95 | 36.1 |
| Zm00001d052838_P001 | Maize | nucleus | 36.92 | 35.64 |
| GSMUA_Achr3P23600_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 46.15 | 34.88 |
| AT1G54830.3 | Thale cress | nucleus | 38.46 | 34.56 |
| Bra018589.1-P | Field mustard | nucleus | 38.97 | 34.55 |
| CDX93525 | Canola | nucleus | 38.97 | 34.55 |
| GSMUA_Achr6P16620_001 | Banana | cytosol | 33.33 | 34.21 |
| PGSC0003DMT400008660 | Potato | nucleus | 43.59 | 33.73 |
| Solyc01g079870.2.1 | Tomato | nucleus | 44.62 | 33.72 |
| PGSC0003DMT400023211 | Potato | nucleus | 44.1 | 33.59 |
| VIT_05s0020g02790.t01 | Wine grape | nucleus | 45.13 | 33.59 |
| Bra030749.1-P | Field mustard | nucleus | 37.44 | 33.49 |
| KRH68581 | Soybean | cytoskeleton, cytosol, nucleus, plastid | 40.51 | 33.33 |
| GSMUA_Achr10P... | Banana | nucleus | 32.82 | 32.99 |
| Bra031651.1-P | Field mustard | nucleus | 38.46 | 32.89 |
| CDY06341 | Canola | nucleus | 38.46 | 32.89 |
| AT1G08970.4 | Thale cress | nucleus | 38.46 | 32.47 |
| KRG96853 | Soybean | nucleus | 42.05 | 31.78 |
| KRH33966 | Soybean | nucleus | 42.56 | 31.44 |
| GSMUA_Achr3P00060_001 | Banana | mitochondrion, plastid | 16.92 | 31.43 |
| GSMUA_Achr11P... | Banana | cytosol | 40.51 | 31.1 |
| VIT_14s0128g00250.t01 | Wine grape | nucleus | 41.03 | 30.42 |
| KRG92828 | Soybean | nucleus | 40.0 | 29.66 |
| CDY22654 | Canola | cytosol | 38.46 | 29.53 |
| KRH43409 | Soybean | nucleus | 30.77 | 29.27 |
| HORVU7Hr1G048760.3 | Barley | plastid | 38.97 | 29.23 |
| CDY31119 | Canola | nucleus | 27.18 | 27.75 |
| GSMUA_Achr11P... | Banana | cytosol | 41.03 | 26.06 |
| CDY32142 | Canola | mitochondrion, nucleus | 37.95 | 25.0 |
| KRH20891 | Soybean | nucleus | 30.77 | 24.69 |
| Zm00001d005993_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 34.87 | 24.37 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus | 15.38 | 23.81 |
| CDX95019 | Canola | cytosol, mitochondrion, nucleus | 38.46 | 22.94 |
| KRH20896 | Soybean | nucleus | 22.05 | 22.4 |
| KRH20893 | Soybean | nucleus | 28.72 | 20.97 |
| GSMUA_Achr9P11550_001 | Banana | cytosol, nucleus, plasma membrane | 38.97 | 11.14 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P19420_001 | EnsemblPlants:GSMUA_Achr1T19420_001 | EnsemblPlantsGene:GSMUA_Achr1G19420_001 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF71 |
| SEG:seg | SUPFAM:SSF47113 | UniParc:UPI000296CC74 | UniProt:M0S1A0 | MapMan:35.1 | : |
Description
Transcription factor [Source:GMGC_GENE;Acc:GSMUA_Achr1G19420_001]
Coordinates
chr1:+:14556190..14556962
Molecular Weight (calculated)
22381.0 Da
IEP (calculated)
6.773
GRAVY (calculated)
-0.260
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQPGQTAPP MIGVATGVPY AAAAAASAGG PYQAYQHLYQ QQQQQQQQQL QMFWADQYRE IEQTTDFKNH SLPLARIKKI MKADEDRRTL QKNDIAAAVS
101: RTDVFDFLID IVPREEGKED VARPLGAPPT DPMSYYYLWL LLWREWLVLR RTCLPCSLYG LQHYIPYQAL LLSLIVVLKC LIPIDYMFDL ARRGS
101: RTDVFDFLID IVPREEGKED VARPLGAPPT DPMSYYYLWL LLWREWLVLR RTCLPCSLYG LQHYIPYQAL LLSLIVVLKC LIPIDYMFDL ARRGS
001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
Arabidopsis Description
NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.