Factsheet for Bra018589.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93525	Canola	nucleus	98.64	98.64
Bra031651.1-P	Field mustard	nucleus	90.45	87.28
AT1G54830.3	Thale cress	nucleus	84.09	85.25
Bra030749.1-P	Field mustard	nucleus	83.64	84.4
CDX95019	Canola	cytosol, mitochondrion, nucleus	94.55	63.61
VIT_14s0128g00250.t01	Wine grape	nucleus	70.91	59.32
VIT_05s0020g02790.t01	Wine grape	nucleus	70.45	59.16
Bra003334.1-P	Field mustard	nucleus	48.64	58.15
PGSC0003DMT400023211	Potato	nucleus	65.91	56.64
Solyc01g079870.2.1	Tomato	nucleus	66.36	56.59
PGSC0003DMT400008660	Potato	nucleus	64.09	55.95
Os09t0480700-01	Rice	nucleus	42.27	55.36
TraesCS7D01G237100.1	Wheat	nucleus	46.82	51.76
TraesCS7A01G239500.1	Wheat	nucleus	46.82	51.76
TraesCS7B01G135000.1	Wheat	nucleus	46.36	51.26
GSMUA_Achr4P03920_001	Banana	nucleus	31.36	50.74
TraesCS5A01G256500.1	Wheat	nucleus	46.36	50.25
TraesCS5B01G255900.1	Wheat	nucleus	46.36	50.25
EER96945	Sorghum	nucleus	45.91	50.0
Zm00001d020874_P001	Maize	extracellular	45.45	50.0
Bra018046.1-P	Field mustard	nucleus	50.0	49.77
TraesCS5D01G265000.1	Wheat	nucleus	45.91	49.75
Zm00001d052838_P001	Maize	nucleus	45.0	49.01
EES15444	Sorghum	nucleus	44.09	48.26
Zm00001d031310_P001	Maize	nucleus	43.64	48.0
Os08t0496500-01	Rice	nucleus	44.09	47.32
GSMUA_Achr4P13170_001	Banana	nucleus	30.45	45.89
GSMUA_Achr3P11990_001	Banana	nucleus	32.27	44.65
Bra038636.1-P	Field mustard	nucleus, plastid	52.73	42.65
HORVU7Hr1G048760.3	Barley	plastid	46.82	39.62
GSMUA_Achr1P19420_001	Banana	nucleus	34.55	38.97
Zm00001d005993_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	38.18	30.11
GSMUA_Achr9P11550_001	Banana	cytosol, nucleus, plasma membrane	50.91	16.42

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	EnsemblPlantsGene:Bra018589	EnsemblPlants:Bra018589.1	EnsemblPlants:Bra018589.1-P	InterPro:CBFA_NFYB_domain
GO:GO:0000003	GO:GO:0003674	GO:GO:0003712	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009719
GO:GO:0009738	GO:GO:0009740	GO:GO:0009791	GO:GO:0009987	GO:GO:0010029	GO:GO:0046982
GO:GO:0048574	GO:GO:1903506	GO:GO:2000306	InterPro:Histone-fold	InterPro:IPR009072	UniProt:M4DPZ8
PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF75	SUPFAM:SSF47113	UniParc:UPI000253E81B	SEG:seg

Description

AT1G08970 (E=3e-068) HAP5C, NF-YC9 | NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9); DNA binding / transcription factor

Coordinates

chrA06:+:3092121..3093018

Molecular Weight (calculated)

24496.0 Da

IEP (calculated)

5.057

GRAVY (calculated)

-0.565

Length

220 amino acids

Sequence
(BLAST)

001: MDQQEHGQSG AMNYATNPYQ TNPMTTTAPG SAGPAAPQGQ LAFHQIHQQQ QQQQLTQQLQ VFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFLLELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGRGT VPEAAAAAGY PYGYLPPGTG PIGNPGMVMG
201: NPGGAYPPNP YMEFMSSQVE

Best Arabidopsis Sequence Match ( AT1G08970.3 )
(BLAST)

001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N

Arabidopsis Description

NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.